Gene detail

Gene detail information of Glyur000546s00034974

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55520.1	2.00E-56	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
NR	AFK46015.1	1.26E-101	unknown [Medicago truncatula]
COG	YP_008150972.1	3.00E-25	peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9M2S7\|FK201_ARATH	5.00E-88	Peptidyl-prolyl cis-trans isomerase FKBP20-1
trEMBL	tr\|I3T0H3\|I3T0H3_MEDTR	5.00E-102	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU004231}

Sequence

Transcript Sequence

>Glyur000546s00034974.1
AACACGTGCAAGGTCATTTGACATACACATGCGCTAATTGTAACGCATGGGGTATCATTATTCCCCGGTGGCGTAACGTTTATTCCCCAAACCTTCGATATCATTTGGCTTCATCAGACGCATGGCCACGCAAGTCCTCCGAAATTCGCCGCTATCTTCAGTGACTATAATCACCCTTCACTCGCTTCGTTCCAGAAGCTCCTCTCTTCGCCCGAAAAAGGGGGCAATGGTATTCATACAACTGGAGATAGTAATTGGATACTGTCTTCGAGCTTTGGATCTAGAATGAGTACAAAATATGGATGGAGCTATTGATTTGACTGGTGACGGAGGCGTCATTAAGACCACCGTGAGAAAAAGCAAACCTGATGCTGTTGCTCCAACAGAAAATTTTCCTCTTGTNGATGTTCATTATGAAGGCACACTTGCTGATACTGGTGAAGTTTTTGACACTACACATGAAGATAACACTGTCTTCTCTTTTGAGCTTGGAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGTTGGAGAAATTGCAAAGATAACTTCCAAGCCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGATGCAACACTTGTTTTTGAAGTTGAACTAGTTGCCTGTCGGCCTCGGAAGGGCTCCAGTGCTGGAAGTGTTTCAGAGGAGAGGGCTAGGCTAGAAGAGCTGAAGAAGCAGAGAGAGCTAGCTGCTGCTGCCAAAGAGGAGGAGAAGAAGAAAAGAGAAGAAGCAAAAGNAGCTGCTGCGGCACGTGTGCAAGCCAAGTTAGAAGCCAAGAAAGGTCAAGGGAAGAGTAAAGGTAAAGCAAAATAGGGACTCATCAATCATCTACATAAATTTGATATATAATGACAATCAAATTGTTATTTATCCACTATTCAGTATATCTCTTCCCCATTGACCCATCCAAAACAATGGNCAAAACAATGTGAAAGCGAGTTCATTTGGTTTTTCGTGAGAGACTCNACTTATGTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00546	48091	51643	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000546s00034974.1	PF00254.23	FKBP_C	34	118	1.70E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.043
SRR1783600	control	12.104
SRR1783602	moderate drought stress	15.269
SRR1811619	moderate drought stress	15.410

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.346
DRR006520	Root Summer glycyrrhizin high producing strain	25.915
DRR006521	Root Winter glycyrrhizin high producing strain	45.488
DRR006522	Root Winter glycyrrhizin high producing strain	45.286
DRR006523	Root Summer glycyrrhizin low producing strain	24.901
DRR006524	Root Summer glycyrrhizin low producing strain	24.375
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.555
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.264

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.278
SRR2868004	Drought Stress (root)	29.630
SRR2967015	Control (root)	22.559

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.525
SRR9715740	Leaf	21.721
SRR9715741	Leaf	18.218
SRR9715739	Root	5.443
SRR9715742	Root	8.096
SRR9715743	Root	7.547

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.857
SRR8749028	MeJA induced 9h	31.071
SRR8749029	MeJA induced 9h	39.747
SRR8749030	Uninduced	37.857
SRR8749031	Uninduced	15.946
SRR8749032	Uninduced	21.650

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.207
SRR8400027	Control - Root	24.459