Gene detail

Gene detail information of Glyur000546s00034973

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39710.1	5.00E-157	Eukaryotic aspartyl protease family protein
NR	XP_004503158.1	0	PREDICTED: aspartic proteinase PCS1-like [Cicer arietinum]
Swissprot	tr\|Q9LZL3\|PCS1L_ARATH	2.00E-174	Aspartic proteinase PCS1 (Precursor)
trEMBL	tr\|A0A072UYS9\|A0A072UYS9_MEDTR	0	Aspartic proteinase nepenthesin {ECO:0000313\|EMBL:KEH34727.1}

Sequence

Transcript Sequence

>Glyur000546s00034973.1
ATGAATATGGCTTCCTCTGCCCATGTTCTCCTTCTTGTTCCTCCTCTTACAGTTATTATCTTTTTCATCACATTCCTTCAAGTCCAAACAAGTGCTTCTTCTGCTTCTCTCTCATCTTCACCACAAACCCCTCTCATATTGCCTTTAAAACTCCAAACACTCCCACATGGCTCTGTTTCAGTTCCAACAAGGCCTTCTTCTTCTTCTTCACGTAAGCTCTCTTTCCAGCACAATGTAACCTTAACAGTTTCACTAACCGTAGGCTCGCCCCCACAGAGAGTTACCATGGTCCTCGACACAGGGAGTGAACTCTCCTGGCTCCACTGTAAAAAGCTCCCAAATTTAAACTCCATTTTCAACCCACTCCTCTCTTCGTCATACACCCCAACGCCATGCACCTCACCTATTTGCAAGACTCNAACCCGAGACTTTCCCGTACCCGTTTCCTGTGATCCAAGGAGGCTCTGCCACGCCACCGTCTCCTACGCCGATGCCACCTACATCGAAGGCAACCTCGCCACGGAGACTTTCTTTGTCGGCGGGTCGGCACAACCCGGCACCATATTCGGGTGCATGGATTCCGGGTTCAGNTCCAACACCAACGAGGACTCAAAGACAACCGGGTTAATGGGCATGAACCGCGGGTCGCTCTCGTTTGTGACCCAATCGGGTTTACCCAAATTCTCCTACTGCATCTCCGGNCACGACTCCTCCGGCGTGTTGCTCTTCGGCGACACAAAATTCGCGTGGCTGGGACCGTTGAAGTACACTCCCCTAGTCAAAATGAACACCCCATTGCCGTACTTTGACCGGGTCGCATACACGGTTCGACTCAAAGGGATACGGGTCGGGAAGAAGCCAATACGGGTACCCGACTCNGTTTTCGCCCCTGATCACACCGGGGCGGGTCAGACCATGGTGGACTCAGGTACCCAGTTCACGTTTCTTCTCGGGCCGGTTTACACCGCTTTGAGGGAAGAGTTCGTGGCCCAGACGAAAGGGGTGCTGACCCTTTTGGANGACCCGAATTTTGTGTTCCAGGGGGCAATGGACCTGTGCTATCGGGTTGGTTTGGGTCGGGTCAGGCTCCCTCCGGTTCCCTCGGTGACGCTTGTGTTTGAGGGGGCGGAGATGAGTGTGTCCGGGGAGAGGCTGTTGTATCGCNTGGCTGACGTGGCGAGGGGGAGGGATTCGGTGTATTGTTTCACGTTTGGGAACTCTGACCTATTGGGAATTGAGGCGTATGTTATTGGGCATTACCATCAACAAAACGTGTGGATGGAGTTTGATTTGGTCAACTCTAGAGTTGGATTTGCTGACACTAGGTGTGAACTTGCTAGTCAACGACTAGGCATAGGTCCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00546	42532	43896	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000546s00034973.1	PF14543.1	TAXi_N	82	245	2.70E-35
Glyur000546s00034973.1	PF14541.1	TAXi_C	273	439	6.80E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.316
SRR1783600	control	3.216
SRR1783602	moderate drought stress	3.669
SRR1811619	moderate drought stress	3.724

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.847
DRR006520	Root Summer glycyrrhizin high producing strain	0.863
DRR006521	Root Winter glycyrrhizin high producing strain	0.409
DRR006522	Root Winter glycyrrhizin high producing strain	0.477
DRR006523	Root Summer glycyrrhizin low producing strain	2.303
DRR006524	Root Summer glycyrrhizin low producing strain	2.152
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.726

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.333
SRR2868004	Drought Stress (root)	6.577
SRR2967015	Control (root)	6.577

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.088
SRR9715740	Leaf	20.607
SRR9715741	Leaf	34.151
SRR9715739	Root	5.142
SRR9715742	Root	12.677
SRR9715743	Root	11.686

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.444
SRR8749028	MeJA induced 9h	1.006
SRR8749029	MeJA induced 9h	0.535
SRR8749030	Uninduced	1.425
SRR8749031	Uninduced	0.110
SRR8749032	Uninduced	0.336

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.662
SRR8400027	Control - Root	6.512