Gene detail information of Glyur000545s00023422 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72950.1 | 8.00E-19 | Disease resistance protein (TIR-NBS class) |
| NR | AES76331.2 | 1.13E-39 | functional resistance protein KR1, putative [Medicago truncatula] |
| Swissprot | tr|Q9SSN3|TIR_ARATH | 5.00E-21 | Toll/interleukin-1 receptor-like protein |
| trEMBL | tr|G7KK77|G7KK77_MEDTR | 4.00E-40 | Functional resistance protein KR1, putative {ECO:0000313|EMBL:AES76331.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00545 | 109400 | 109864 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000545s00023422.1 | PF01582.15 | TIR | 19 | 60 | 1.00E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.682 |
| SRR1783600 | control | 1.578 |
| SRR1783602 | moderate drought stress | 1.751 |
| SRR1811619 | moderate drought stress | 1.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.892 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.911 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.690 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.667 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.287 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.524 |
| SRR2868004 | Drought Stress (root) | 0.848 |
| SRR2967015 | Control (root) | 2.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.371 |
| SRR9715740 | Leaf | 5.647 |
| SRR9715741 | Leaf | 1.917 |
| SRR9715739 | Root | 0.759 |
| SRR9715742 | Root | 0.640 |
| SRR9715743 | Root | 0.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.399 |
| SRR8400027 | Control - Root | 0.611 |