Gene detail

Gene detail information of Glyur000545s00023420

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17740.1	1.00E-45
NR	KHN43672.1	2.35E-62	UPF0614 protein C14orf102-like protein [Glycine soja]
Swissprot	tr\|Q40392\|TMVRN_NICGU	1.00E-16	TMV resistance protein N
trEMBL	tr\|G7JP36\|G7JP36_MEDTR	7.00E-60	Uncharacterized protein {ECO:0000313\|EMBL:AES86890.2}

Sequence

Transcript Sequence

>Glyur000545s00023420.1
ATGATCCTTTACATGTTGCGGATTACCCTGGAGTCTAGAATACTAAGAGTAAAGTCGCTTCTGGATGTTGGGTCTGATGATGGAGTCCTCATGGTAGGGATCCATGGGATTGGCGGAATCGGTAAAACAACACTTGCACGAGCAATTTATAATTTGANAGCTGATCAATTTGAAGGTTTATGTTTTCTTCACAATGTGAGGGAAATTTCAGCTAAACATGGCTTAGCATATCTCCAGCAGAAGCTCCTTTCCAAAACAATTGAATTGAACACTGAGATAGGAGATGTAAATGAAGGAATCCCAACCATAAAGCGAAGGCTACATCGGAAGAAGGTTCTTTTGGTTCTNGATGATGTTGATGTACTACAGCAGCTGCAGGGGTTGATGATGATACTTCTACAGATAATTGAAGATGTCTCCAACACGATCAACCGTGTTCCTTTACATATTGTGGATCACCCCGTTGGACTGGAATCTCGAGTGCAACAAGTAAAGTCACTTCTAGATGTTGGATCTGGTGATGGAGTGCTCATGGTAGGGATCTGTGGAATTGGCGGAATAGTATGGCATTCTGGAAGAATACGTGTCTGCTATGTTGCCTATANAAGCCTATGTGAAGTTTTTCTTTGCTTTTCTGGTGGAGTAGATGATAAAATTTATTGGAAACCATCTGTAGTTGTGTGGCTTTTTGCATTGTCATATGAGATGTGTAGAGGTGGCTCACTCCACAGAATCTGTGGGTTGTTCGAAAGTGCATTGGGTAATGATAGGCTTTGCAGCTCAGTTGTGCTGTGGCGTTGCTACATTATGTATGAATTGGACATTGCACACGATCCTTCTGCAGCTCATCGTGTTTTCTTTCGGGCTATTCATTCCTGNCCATGGTCGAAACAGCTATGGTTGGATGGCTTTTCCAAACTAAACTATGTCTTTAGTGGAAAAGAGCTATCTGATCTGCAGGAAGTAATGCCGGATAAAGAACTGAATTTGAGAACTGATTTTTATGAGATCCTTTTGCAACAACCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00545	92344	107164	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000545s00023420.1	PF00931.17	NB-ARC	13	130	1.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.302
SRR1783600	control	0.407
SRR1783602	moderate drought stress	1.622
SRR1811619	moderate drought stress	1.768

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.481
DRR006520	Root Summer glycyrrhizin high producing strain	9.024
DRR006521	Root Winter glycyrrhizin high producing strain	0.370
DRR006522	Root Winter glycyrrhizin high producing strain	0.262
DRR006523	Root Summer glycyrrhizin low producing strain	7.464
DRR006524	Root Summer glycyrrhizin low producing strain	7.973
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.436

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.189
SRR2868004	Drought Stress (root)	9.612
SRR2967015	Control (root)	7.650

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.216
SRR9715740	Leaf	13.915
SRR9715741	Leaf	20.144
SRR9715739	Root	1.634
SRR9715742	Root	16.714
SRR9715743	Root	14.860

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.120
SRR8749028	MeJA induced 9h	0.323
SRR8749029	MeJA induced 9h	0.077
SRR8749030	Uninduced	0.183
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.090

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.803
SRR8400027	Control - Root	6.568