Gene detail information of Glyur000545s00023410 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20230.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_003549191.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LNU6|PPR53_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g20230 |
| trEMBL | tr|I1MQM3|I1MQM3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G34430.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00545 | 51632 | 53837 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000545s00023410.1 | PF01535.15 | PPR | 21 | 43 | 0.29 |
| Glyur000545s00023410.1 | PF01535.15 | PPR | 52 | 78 | 0.043 |
| Glyur000545s00023410.1 | PF13041.1 | PPR_2 | 83 | 129 | 2.20E-11 |
| Glyur000545s00023410.1 | PF01535.15 | PPR | 158 | 181 | 0.11 |
| Glyur000545s00023410.1 | PF13041.1 | PPR_2 | 183 | 230 | 2.30E-11 |
| Glyur000545s00023410.1 | PF01535.15 | PPR | 259 | 282 | 0.031 |
| Glyur000545s00023410.1 | PF01535.15 | PPR | 328 | 353 | 0.4 |
| Glyur000545s00023410.1 | PF14432.1 | DYW_deaminase | 358 | 481 | 9.90E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.193 |
| SRR1783600 | control | 2.237 |
| SRR1783602 | moderate drought stress | 3.003 |
| SRR1811619 | moderate drought stress | 3.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.983 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.873 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.847 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.810 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.497 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.565 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.183 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.377 |
| SRR2868004 | Drought Stress (root) | 5.780 |
| SRR2967015 | Control (root) | 7.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.335 |
| SRR9715740 | Leaf | 4.882 |
| SRR9715741 | Leaf | 4.172 |
| SRR9715739 | Root | 8.609 |
| SRR9715742 | Root | 11.761 |
| SRR9715743 | Root | 11.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.418 |
| SRR8749028 | MeJA induced 9h | 15.023 |
| SRR8749029 | MeJA induced 9h | 13.528 |
| SRR8749030 | Uninduced | 8.427 |
| SRR8749031 | Uninduced | 5.599 |
| SRR8749032 | Uninduced | 6.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.713 |
| SRR8400027 | Control - Root | 7.952 |