Gene detail information of Glyur000545s00023408 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17700.1 | 1.00E-102 | cyclic nucleotide-binding transporter 1 |
| NR | XP_004515287.1 | 0 | PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9LDR2|CNG19_ARATH | 3.00E-119 | Putative cyclic nucleotide-gated ion channel 19 |
| trEMBL | tr|A0A061FQZ4|A0A061FQZ4_THECC | 0 | Cyclic nucleotide-binding transporter 1 isoform 1 {ECO:0000313|EMBL:EOY19695.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00545 | 28673 | 48883 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.825 |
| SRR1783600 | control | 0.765 |
| SRR1783602 | moderate drought stress | 2.600 |
| SRR1811619 | moderate drought stress | 2.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.466 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.240 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.143 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.935 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.876 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.934 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.957 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.429 |
| SRR2868004 | Drought Stress (root) | 8.603 |
| SRR2967015 | Control (root) | 8.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.728 |
| SRR9715740 | Leaf | 6.382 |
| SRR9715741 | Leaf | 9.144 |
| SRR9715739 | Root | 0.724 |
| SRR9715742 | Root | 3.274 |
| SRR9715743 | Root | 3.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.751 |
| SRR8749028 | MeJA induced 9h | 11.868 |
| SRR8749029 | MeJA induced 9h | 7.039 |
| SRR8749030 | Uninduced | 11.107 |
| SRR8749031 | Uninduced | 11.349 |
| SRR8749032 | Uninduced | 8.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.610 |
| SRR8400027 | Control - Root | 4.299 |