Gene detail information of Glyur000545s00023407 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17700.1 | 2.00E-78 | cyclic nucleotide-binding transporter 1 |
| NR | KHN24540.1 | 0 | Putative cyclic nucleotide-gated ion channel 20, chloroplastic [Glycine soja] |
| Swissprot | tr|Q9LD37|CNG20_ARATH | 4.00E-145 | Probable cyclic nucleotide-gated ion channel 20, chloroplastic (Precursor) |
| trEMBL | tr|I1MQM1|I1MQM1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G34390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00545 | 9164 | 22993 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.295 |
| SRR1783600 | control | 7.454 |
| SRR1783602 | moderate drought stress | 7.074 |
| SRR1811619 | moderate drought stress | 7.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.013 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.304 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.618 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.579 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.780 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.909 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.689 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.976 |
| SRR2868004 | Drought Stress (root) | 20.579 |
| SRR2967015 | Control (root) | 22.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 49.014 |
| SRR9715740 | Leaf | 41.967 |
| SRR9715741 | Leaf | 56.677 |
| SRR9715739 | Root | 4.457 |
| SRR9715742 | Root | 14.201 |
| SRR9715743 | Root | 11.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.173 |
| SRR8749028 | MeJA induced 9h | 16.606 |
| SRR8749029 | MeJA induced 9h | 15.521 |
| SRR8749030 | Uninduced | 17.124 |
| SRR8749031 | Uninduced | 9.804 |
| SRR8749032 | Uninduced | 6.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.166 |
| SRR8400027 | Control - Root | 18.462 |