Gene detail

Gene detail information of Glyur000544s00017441

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04340.1	0	FtsH extracellular protease family
NR	AES61238.2	0	FTSH extracellular protease family protein [Medicago truncatula]
COG	YP_004281736.1	5.00E-55	ATP-dependent metalloprotease FtsH [Desulfurobacterium thermolithotrophum DSM 11699]
Swissprot	tr\|Q9BAE0\|FTSH_MEDSA	8.00E-48	ATP-dependent zinc metalloprotease FTSH, chloroplastic (Precursor)
trEMBL	tr\|G7I6U3\|G7I6U3_MEDTR	0	FTSH extracellular protease family protein {ECO:0000313\|EMBL:AES61238.2}

Sequence

Transcript Sequence

>Glyur000544s00017441.1
TTGTCTGCGGGCTCAGTCACCAGGCTCCCAAAATCAGTCATTCAGAAAGACCTGGAAACTGTGCAAAGAAAACATTTAGAACAAACAATTCTTCCTACCATTTTGGATGTTGAAGATCGTGAGCCATTCTTTCATCAAGACTCTATCGATTTTACCCAACGTTTAAAAAGAAGTCTTGAAGACTCAAGGGAGCTGCAAAGGAATTTAGAGGCTCAGAGAAGAAAAAGTATGAAGTCCGGCAAGGAAAAGAGTCGTATTATTTACTCACCTGAAGAAGAGGAAAAAATTCTTTTGGACCGAGATAGAGTAGTGTCAATGACTTGGTACAATGAAGAGAAAAATAGATGGGAGATGGATCCTGTGGCTGTTCCTCATGCTGTCTCAAAACATCTAATAGAGCAGGTCCGGATCAGGCATGACTGGGGTGCCATGTATATTGCATTGAAGGGGGAGGATAAAGAGTTTTATGTAGACATAAAGGAATTCGAAATGCTTTTTCAAGATATTGGGGGTTTTGATGGGCTGTATAAGAAAATGCTAGCCTGTGGTATTCCAACAGCTGTTCATCTAATGTGGATTCCTTTCTCAGAGTTGGATTTCAGCCAACAGTTTCTTGTGATATTAAGGTTTTCTCGTCGGTTTTTGAGTGGCTTGTGGAATTCTGTAGTTGTCTTGAATGCAAGAAATTGGATCTTTAAGCAAATTAAGGATACAGCTGATGACATAATGATGGTGATAGGGTTTCCTATTGTGGAGTTTTTAATCCCTTACCCGGTGAGGATAAAATTAGGGATGGCTTGGCCAGAAGAAGAGAATGTCGGCTCCACATGGTACTTGGAATGGCAATTAAATGCAGAAGCAAACTTTAAGTCCAGACAAATAGATGATGTTAGATGGTTTATTTCGTTTTTCATCAGAGCTGCTATATGTGGGTTTGTTTTGTTTCACGTGTTCAAATTTACGAGGAGAAGAATTCCAAGACTTCTTGGTTATGGTCCCATACGAAAAGATCCGAATAAGATGAAATTTCGGCGAGTGAAGTATTACATTAAACAAAAATTGAGAAGAATCAAGAATAAGAGACAGGATGGTGTTGATCCCATAAAGACAGCTTTTGACAAGATGAAGAGGGTGAAGAATCCACCAATACCATTGAAGAACTTTGCTAGCATTGAGTCTATGAAAGAGGAAATCAATGAGGTTGTGGCGTTTTTGCAAAATCCAGGGGCATTTCAAGAAATGGGTGCGCGGGCACCTCGGGGTGTCCTTATTGTAGGCGAGAGGGGTACGGGCAAGACATCTCTAGCATTGGCTATAGCTGCAGAGGCTAAGGTGCCTGTTGTGGAAATTAAGGCCCAACAATTGGAGGCTGGGCTGTGGGTTGGACAAAGTGCGTCCAATGTTCGTGAATTGTTTCAAACCGCAAGAGATTTGGCTCCTGTGATAATATTTGTGGAGGATTTTGACCTGTTTGCTGGTGTACGTGGCAAGTTTCTCCATACTAAAAATCAAGATCATGAAGCTTTCATTAATCAACTGCTTGTGGAACTTGATGGATTTGAAAAACAAGATGGGGTTGTTTTGATGGCTACTACAAGAAATCTCAAGCAAATTGATAAGGCCTTGCGGAGGCCAGGTCGCATGGATAGAATATTTCATCTTCAAAGCCCAACACAGGCAGAGAGAGAAAAAATATTATACATGGCAGCGAAGGAAACCATGGATGATCAACTTATTGATTATGTAGACTGGAAAAAGGTTGCTGAGAAGACGGCTCTTTTACGACCTATTGAGTTAAAAATTGTTCCTTTGGCTTTGGAAGGAAGTGCCTTCCGGAGCAAAGTTCTTGACACAGATGAATTGATGAGCTACTGTAGTTTCTTTGTGTCTTTCAGTTCTGCAATCCCCCAATGGCTGCGGAAAACCAAAATTGTCAAGAAGTTAAGCAAAGTGGTGGTGAATCATCTGGGACTTACATTAACAAAAGAGGATTTCCAAAATGTTGTTGATTTGATGGAACCATATGGCCAGATAAGCAATGGGATAGAGCTTTTGAGTCCTCCACTTGAATGGACGAGGGAAACTAAGTTTCCACATGCTGTCTGGGCAGCTGGTCGTGGTCTTATTGCTCTTTTATTACCAAATTTTGATGTTGTTGACAATCTTTGGCTTGAACCTCTATCCTGGCAGGGAATTGGATGTACAAAAATCACGAAAGCAAGAAATGAAGGTTCCATTAATGGGAATTTAGAATCAAGATCATATCTTGAAAAGAAGCTTGTGTTTTGTTTTGGTTCTTATGTTGCATCCCAAATGTTACTTCCTTTTGGGGAAGAAAACTTACTGTCTTCATCTGAGATACAGCAGGCACAAGAGATAGCTACACGAATGGTCATTCAATATGGATGGGGACCTGATGATAGTCCTGCAATTTATTACCGTAGTAAAGCGGTTAGTGCATTAAGCATGGGAGATGACCATGAATATGTGATGGCAGCTAAAGTTGAAAAGATGTTTGATTTGGCATATCTCAAAGCAAGAGAAATGCTGCAGAGAAATCGCNTGGTACTAGAAAAGATCGTAGAGGAATTACTTGAATTTGAAATTTTGACCGGAAAGGATTTAGAGAGAATTACTGAAGATAATGGTGCAATCAGGGAGAAAGAGCCGTTTACTCTTTTTGAAGTTCAAGTTAGTGAGCCAAAATCCGGCAGCTTCCTTGAAAGAGGAAATGCATCAGGAGGGGCTCTACTAGCATCCTAGATCAATGGGATACTATTGGGTATGGTACATTTTGAAGTGATACTCCATTACTNNNNNNNNNNNNNNNNNNNNNNGGGGGATCAGACTGTTCATTTGTACTTGGATAAGCATGCATGGTTTTAGGATGCAACATGCTGTCCGCTTATTATGCGTGTGTTCTATGGGATGAGAAGAGATAGCAGTTTTCCTTCTAGGCCTTCGTTTCTTCATGTCAGCAAGATCCCNGTAGCTTTTCCTTAGAATTGTAACTTACATTCGTTGTTGTATAGTTATTGGACTTTTATCCTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00544	137864	148256	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000544s00017441.1	PF00004.24	AAA	422	554	3.00E-31
Glyur000544s00017441.1	PF01434.13	Peptidase_M41	699	878	9.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.239
SRR1783600	control	4.265
SRR1783602	moderate drought stress	4.805
SRR1811619	moderate drought stress	4.724

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.371
DRR006520	Root Summer glycyrrhizin high producing strain	5.373
DRR006521	Root Winter glycyrrhizin high producing strain	5.545
DRR006522	Root Winter glycyrrhizin high producing strain	5.232
DRR006523	Root Summer glycyrrhizin low producing strain	4.668
DRR006524	Root Summer glycyrrhizin low producing strain	4.581
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.540
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.613

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.003
SRR2868004	Drought Stress (root)	7.547
SRR2967015	Control (root)	7.090

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.357
SRR9715740	Leaf	12.077
SRR9715741	Leaf	8.371
SRR9715739	Root	0.533
SRR9715742	Root	5.863
SRR9715743	Root	5.645

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.884
SRR8749028	MeJA induced 9h	5.374
SRR8749029	MeJA induced 9h	4.622
SRR8749030	Uninduced	2.609
SRR8749031	Uninduced	1.959
SRR8749032	Uninduced	2.209

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.539
SRR8400027	Control - Root	14.987