Gene detail

Gene detail information of Glyur000544s00017439.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08590.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_003590988.1	0	Receptor-like protein kinase [Medicago truncatula]
COG	YP_004775215.1	3.00E-58	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9FRS6\|PXL1_ARATH	0	Leucine-rich repeat receptor-like protein kinase PXL1 (Precursor)
trEMBL	tr\|G7I6U4\|G7I6U4_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AES61239.1}

Sequence

Transcript Sequence

>Glyur000544s00017439.1
ACTTCCTATAACTTTCCATCGCCTCCCCTTCATTCTTTGTTCCCTGCTCTGAAATATGCAACAACATTAAGAGGAACAAAACGCAGAAGAGAACAAGTACAACCACCCAAAATGCAAACCTACTTGCTGATCTTCTACTGTTACATGGGTCTCTCTCTCGTTTTTGTTGAGGGTGCTCAATATGCAGTAGATGGTGAGTTATCNACTCTGCTCTCTATCAAATCAAGTCTCATTGATCCAATGAATTATCTGAAGGATTGGAAACCACCAAGCAATGAGACCAAGCAAGGTTGGTTCCATTGTAACTGGACNGGAGTTGGTTGCAACTCCAAAGGCTTTGTAGAGAGTCTTGACCTCTACAACATGAACCTAAGTGGTCGTGTTTCAGACCACATTCAATCACTCTCAAGTCTATCTTCTTTCAACNTAAGCTGTAACAACTTTGCTTCAACACTTCCCAAATCACTATCCAACCTCACCTCTCTGAAGAGCTTTGATGTGAGCCAGAACTACTTCACTGGCAGCTTTCCAACNGGTCTCGGAAGAGCTGCGGGGTTGAGATCGATTAACGCGTCAAGCAATGATTTTTCGGGTTTTCTCCCCGAGGATATTGGAAATGCAACATTGCTTGAGAGCCTTGATTTTAGAGGGAGCTACTTTGTAAGTCCAATCCCCAGGAGTTTTGAAAATTTGCAGAAGCTCAAATTTCTAGGCCTTTCAGGCAATAACTTCACAGGTGTGGTTCCAGAATATCTTGGGGGACTCACTTCTCTGGAGACATTAATTCTGGGATACAATGAGTTTGAAGGTGAGATCCCTGCAGAGTTTGGCAACTTGACCAATCTGCAATACCTTGACTTGGCTGTGGGCAGTCTCAGTGGACAAATTCCACCTGAATTAGGTAAGCTGAAAAATCTCACTACAATTTACTTATACCNTAACAAGTTCACAGGGAAAATTCCACCTCAACTTGGCAACATTAAGNCACTAGCATTTCTGGACCTCTCTGACAATCAGATCTCAGGAGAGATTCCAGAAGAACTAGCTGAATTGGAAAACCTGCAGCTCTTGAATTTGATGAGCAATAAACTAACTGGTCCTGTACCAGAGAAGCTTGGTGAGTTGAAAAACTTACAGGTGCTTGAGCTATGGAAGAATTCTTTAGAAGGCCCTTTGCCAATGAACCTTGGAAAANATTCTCCTTTGCAGTGGTTGGATGTGTCCTCTAACTCATTGTCTGGTGAGATCCCTCCAGGTTTGTGTACTACAGGCAATCTCACTAGACTAATTCTCTTCAACAATTCCTTCTCTAGTCCCATTCCGCGTGAACTTTCAAACTGTTCGTCTTTGGTGCGTGTTCGGATTCAGAACAATCTTATTTCCGGAACTATTCCAGTTGGTTTTGGCAACCTCCCGGGCCTTCAAAGGCTGGAGTTGGCAAAGAACAACCTCACTGGGCAAATTCCTATAGATATTACCTCATCCACATCACTCTCTTTCATTGATGTATCTTGGAACCACCTTGAGTCATCTCTCCCTTCAGAAATTCTCTCTATTCCAACCCTTCAAACCTTCATTGCCTCTCACAACAACTTTAAAGGAACTATCCCAGATGAGTTCCAGGACTGTCCATCTCTCTCTGTGCTGGATCTTTCAAATGCAAATATCTCTGGCACAATCCCAGAAAGTATTGCTTCCTGTCAAAAATTAGTCAATCTTAACCTTAAAAACAACCATTTGACAGGTGGAATCCCGAAATCGATCACAAACATGCCCACCTTATCTGTTCTTGATCTTTCCAGCAATTCACTGACGGGTAGGATACCTGAAAACTTTGGCAGCTCCCCAGCTCTGGAAATGCTGAACCTGTCCTATAACAAACTGGAGGGTCCAGTACCCTCAAATGGGATTCTGGTGACCATAAATCCTAATGATCTTATCGGCAATGCTGGTCTTTGTGGAGGCACTCTTCCTCCATGTTCTCAGAGTTTGACTGTGACAAGCCAGCACAGGAACTCACACATCAGACACATTATTATTGGTTTTGTGACTGGCATTTCAGTGATTTTATCTCTTGGTGTAGCATACTTTGGTGGCAAATGGTTATACAATAGATGGTACTTGTATAACAATTTCATCCATGATTGGTTCAGACAGAGCAATGAAGATTGGCCCTGGAGGCTAGTAGCATTCCAAAGGATCAGTTTCACTAGTAGTGAGATCCTAACTTGCATAAAGGAATCAAATGTCATAGGCATGGGTGGCACTGGTATTGTTTACAAAGCTGAAATCCATAGACCTCATGTGACTGTAGCAGTGAAGAAACTGTGGAGGTCACGGACAGACATAGAAGATGGGAATGATGTATTAAGAGAAGTGGAACTCCTGGGGAGACTAAGGCATAGGAATATTGTAAGGCTATTGGGGTACGTGCACAATGAAAGGGATGTGATTATGGTTTATGAGTACATGCCTAATGGGAATCTTGGAACAGCACTGCATGGTGATCAATCTGCAAGGTTGCTTGTAGATTGGGTCTCAAGGTACAACATAGCTCTTGGAGTTGCGCAAGGGCTGAACTACCTCCACCATGATTGTCATCCACCAGTAATTCACAGGGATATCAAGTCTAACAACATACTCCTTGATGCAAATTTGGAGGCAAGGATAGCAGATTTCGGGTTGGCCAGGATGATGATTCAAAAGAATGAGACAGTTACAATGGTGGCTGGATCTTATGGTTATATTGCACCAGAATATGGGTACACTCTGAAGGTTGACGAGAAGATTGACATATACAGTTATGGAGTGGTACTTTTGGAGCTTCTAACTGGCAAAATGCCCTTAGACCCTGTTTTTGAAGAATCCGTGGACATAGTCGAATGGATACGGAAGAAGAGAAACAACAAAGCCTTGCTAGAAGCACTTGATCCCACCATAGCCGGTCAGTGCAAACATGTGCAGGAAGAGATGCTTCTTGTACTCCGGATTGCACTTCTATGTACTGCAAAGCTTCCCAAGGAAAGACCATCCATGAGAGACATCATCACAATGCTTGGAGAGGCAAAGCCGAGAAGGAAAAGCATTTGCCAAAATGGGGTACAAAACAGTAGCATGGAAAAGGCAACAGTCTTTACCACCTCCCCAGTAGTAAGTCTATTGTAG

Protein Sequence

>Glyur000544s00017439.1
TSYNFPSPPLHSLFPALKYATTLRGTKRRREQVQPPKMQTYLLIFYCYMGLSLVFVEGAQYAVDGELSTLLSIKSSLIDPMNYLKDWKPPSNETKQGWFHCNWTGVGCNSKGFVESLDLYNMNLSGRVSDHIQSLSSLSSFNXSCNNFASTLPKSLSNLTSLKSFDVSQNYFTGSFPTGLGRAAGLRSINASSNDFSGFLPEDIGNATLLESLDFRGSYFVSPIPRSFENLQKLKFLGLSGNNFTGVVPEYLGGLTSLETLILGYNEFEGEIPAEFGNLTNLQYLDLAVGSLSGQIPPELGKLKNLTTIYLYXNKFTGKIPPQLGNIKXLAFLDLSDNQISGEIPEELAELENLQLLNLMSNKLTGPVPEKLGELKNLQVLELWKNSLEGPLPMNLGKXSPLQWLDVSSNSLSGEIPPGLCTTGNLTRLILFNNSFSSPIPRELSNCSSLVRVRIQNNLISGTIPVGFGNLPGLQRLELAKNNLTGQIPIDITSSTSLSFIDVSWNHLESSLPSEILSIPTLQTFIASHNNFKGTIPDEFQDCPSLSVLDLSNANISGTIPESIASCQKLVNLNLKNNHLTGGIPKSITNMPTLSVLDLSSNSLTGRIPENFGSSPALEMLNLSYNKLEGPVPSNGILVTINPNDLIGNAGLCGGTLPPCSQSLTVTSQHRNSHIRHIIIGFVTGISVILSLGVAYFGGKWLYNRWYLYNNFIHDWFRQSNEDWPWRLVAFQRISFTSSEILTCIKESNVIGMGGTGIVYKAEIHRPHVTVAVKKLWRSRTDIEDGNDVLREVELLGRLRHRNIVRLLGYVHNERDVIMVYEYMPNGNLGTALHGDQSARLLVDWVSRYNIALGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLARMMIQKNETVTMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKMPLDPVFEESVDIVEWIRKKRNNKALLEALDPTIAGQCKHVQEEMLLVLRIALLCTAKLPKERPSMRDIITMLGEAKPRRKSICQNGVQNSSMEKATVFTTSPVVSLL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00544	133774	137157	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000544s00017439.1	PF08263.7	LRRNT_2	65	109	2.60E-07
Glyur000544s00017439.1	PF13855.1	LRR_8	209	267	6.30E-08
Glyur000544s00017439.1	PF12799.2	LRR_4	280	317	1.10E-06
Glyur000544s00017439.1	PF12799.2	LRR_4	330	365	5.30E-07
Glyur000544s00017439.1	PF00560.28	LRR_1	402	420	0.83
Glyur000544s00017439.1	PF13855.1	LRR_8	520	580	2.80E-09
Glyur000544s00017439.1	PF13855.1	LRR_8	586	628	2.00E-06
Glyur000544s00017439.1	PF00069.20	Pkinase	747	1016	4.90E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.323
SRR1783600	control	0.327
SRR1783602	moderate drought stress	0.186
SRR1811619	moderate drought stress	0.183

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.112
DRR006520	Root Summer glycyrrhizin high producing strain	0.136
DRR006521	Root Winter glycyrrhizin high producing strain	0.035
DRR006522	Root Winter glycyrrhizin high producing strain	0.034
DRR006523	Root Summer glycyrrhizin low producing strain	0.449
DRR006524	Root Summer glycyrrhizin low producing strain	0.454
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.222
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.175

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.167
SRR2868004	Drought Stress (root)	7.641
SRR2967015	Control (root)	7.511

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.427
SRR9715740	Leaf	0.269
SRR9715741	Leaf	0.333
SRR9715739	Root	0.164
SRR9715742	Root	1.403
SRR9715743	Root	1.282

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.018
SRR8749028	MeJA induced 9h	0.052
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.040
SRR8749031	Uninduced	0.112
SRR8749032	Uninduced	0.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.356
SRR8400027	Control - Root	0.894