Gene detail information of Glyur000544s00017438 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G18480.1 | 3.00E-122 | plant glycogenin-like starch initiation protein 6 |
| NR | KHN14829.1 | 0 | Glycogenin-1 [Glycine soja] |
| COG | YP_004116387.1 | 3.00E-06 | glycosyl transferase family protein [Pantoea sp. At-9b] |
| Swissprot | tr|Q8GWB7|GUX6_ARATH | 6.00E-157 | Inositol phosphorylceramide glucuronosyltransferase 1 {ECO:0000303|PubMed:25122154} |
| trEMBL | tr|I1LBN9|I1LBN9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G30700.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00544 | 123331 | 128790 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.278 |
| SRR1783600 | control | 2.479 |
| SRR1783602 | moderate drought stress | 2.491 |
| SRR1811619 | moderate drought stress | 2.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.507 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.297 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.396 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.266 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.483 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.396 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.274 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.357 |
| SRR2868004 | Drought Stress (root) | 13.074 |
| SRR2967015 | Control (root) | 12.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.358 |
| SRR9715740 | Leaf | 8.914 |
| SRR9715741 | Leaf | 9.179 |
| SRR9715739 | Root | 2.019 |
| SRR9715742 | Root | 4.613 |
| SRR9715743 | Root | 3.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.008 |
| SRR8749028 | MeJA induced 9h | 1.750 |
| SRR8749029 | MeJA induced 9h | 0.888 |
| SRR8749030 | Uninduced | 1.192 |
| SRR8749031 | Uninduced | 0.375 |
| SRR8749032 | Uninduced | 0.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.136 |
| SRR8400027 | Control - Root | 8.916 |