Gene detail information of Glyur000544s00017429 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28640.1 | 1.00E-31 | SSXT family protein |
| NR | XP_006589198.1 | 3.80E-100 | PREDICTED: GRF1-interacting factor 1-like [Glycine max] |
| Swissprot | tr|Q8L8A5|GIF1_ARATH | 5.00E-57 | GRF1-interacting factor 1 |
| trEMBL | tr|I1LBN5|I1LBN5_SOYBN | 1.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G30650.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00544 | 81842 | 85820 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000544s00017429.1 | PF05030.7 | SSXT | 19 | 73 | 1.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 180.832 |
| SRR1783600 | control | 180.876 |
| SRR1783602 | moderate drought stress | 148.333 |
| SRR1811619 | moderate drought stress | 147.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 93.288 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 92.374 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.905 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.365 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 56.005 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 55.468 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.874 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.849 |
| SRR2868004 | Drought Stress (root) | 28.528 |
| SRR2967015 | Control (root) | 34.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.605 |
| SRR9715740 | Leaf | 23.086 |
| SRR9715741 | Leaf | 6.822 |
| SRR9715739 | Root | 301.148 |
| SRR9715742 | Root | 49.864 |
| SRR9715743 | Root | 90.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.629 |
| SRR8749028 | MeJA induced 9h | 8.530 |
| SRR8749029 | MeJA induced 9h | 11.366 |
| SRR8749030 | Uninduced | 9.385 |
| SRR8749031 | Uninduced | 3.411 |
| SRR8749032 | Uninduced | 6.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 87.861 |
| SRR8400027 | Control - Root | 110.530 |