Gene detail information of Glyur000544s00017425 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G54460.1 | 3.00E-40 | TPX2 (targeting protein for Xklp2) protein family |
| NR | XP_004495607.1 | 0 | PREDICTED: protein WVD2-like 1-like [Cicer arietinum] |
| Swissprot | tr|Q8GYX9|WDL1_ARATH | 2.00E-55 | Protein WVD2-like 1 |
| trEMBL | tr|C6T9C8|C6T9C8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G36900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00544 | 42846 | 47691 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000544s00017425.1 | PF06886.6 | TPX2 | 200 | 256 | 6.30E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 105.141 |
| SRR1783600 | control | 105.231 |
| SRR1783602 | moderate drought stress | 119.841 |
| SRR1811619 | moderate drought stress | 119.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.013 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 62.907 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.053 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.622 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 54.351 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.318 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.677 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 74.869 |
| SRR2868004 | Drought Stress (root) | 84.181 |
| SRR2967015 | Control (root) | 91.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.822 |
| SRR9715740 | Leaf | 9.821 |
| SRR9715741 | Leaf | 27.422 |
| SRR9715739 | Root | 6.993 |
| SRR9715742 | Root | 41.641 |
| SRR9715743 | Root | 34.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 78.810 |
| SRR8749028 | MeJA induced 9h | 71.549 |
| SRR8749029 | MeJA induced 9h | 46.562 |
| SRR8749030 | Uninduced | 44.631 |
| SRR8749031 | Uninduced | 31.162 |
| SRR8749032 | Uninduced | 31.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 149.785 |
| SRR8400027 | Control - Root | 192.516 |