Gene detail information of Glyur000544s00017424


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G30620.17.00E-15winged-helix DNA-binding transcription factor family protein
NRAAA50303.12.45E-40histone H1 [Pisum sativum]
Swissprottr|P26569|H12_ARATH7.00E-29Histone H1.2
trEMBLtr|Q41025|Q41025_PEA9.00E-41Histone H1 {ECO:0000313|EMBL:AAA50303.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold005443742738323+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006334  nucleosome assembly


cellular_component

GO:0000786  nucleosome

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000544s00017424.1PF00538.14Linker_histone25935.00E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.187
SRR1783600control14.107
SRR1783602moderate drought stress15.653
SRR1811619moderate drought stress15.310

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.883
DRR006520Root Summer glycyrrhizin high producing strain26.284
DRR006521Root Winter glycyrrhizin high producing strain66.533
DRR006522Root Winter glycyrrhizin high producing strain64.208
DRR006523Root Summer glycyrrhizin low producing strain21.794
DRR006524Root Summer glycyrrhizin low producing strain21.980
DRR006525Leaf Summer glycyrrhizin high producing strain50.985
DRR006526Leaf Summer glycyrrhizin high producing strain50.358

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)129.671
SRR2868004Drought Stress (root)77.855
SRR2967015Control (root)84.032

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf105.541
SRR9715740Leaf83.405
SRR9715741Leaf96.671
SRR9715739Root42.538
SRR9715742Root26.079
SRR9715743Root26.508

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h197.902
SRR8749028MeJA induced 9h94.574
SRR8749029MeJA induced 9h139.165
SRR8749030Uninduced20.034
SRR8749031Uninduced12.419
SRR8749032Uninduced12.739

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root108.715
SRR8400027Control - Root76.249

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved