Gene detail information of Glyur000544s00017420 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08780.1 | 1.00E-43 | ABI3-interacting protein 3 |
| NR | KHN14701.1 | 1.02E-78 | Putative prefoldin subunit 4 [Glycine soja] |
| Swissprot | tr|Q9M4B5|PFD4_ARATH | 1.00E-61 | Probable prefoldin subunit 4 |
| trEMBL | tr|I1LBM5|I1LBM5_SOYBN | 3.00E-78 | Prefoldin subunit 4 {ECO:0000256|PIRNR:PIRNR016477} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00544 | 16941 | 19521 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000544s00017420.1 | PF01920.15 | Prefoldin_2 | 17 | 120 | 4.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.448 |
| SRR1783600 | control | 25.387 |
| SRR1783602 | moderate drought stress | 19.248 |
| SRR1811619 | moderate drought stress | 19.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 62.426 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 61.889 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 60.183 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 59.478 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 56.839 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 56.731 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.190 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 118.525 |
| SRR2868004 | Drought Stress (root) | 90.800 |
| SRR2967015 | Control (root) | 82.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.082 |
| SRR9715740 | Leaf | 43.186 |
| SRR9715741 | Leaf | 39.636 |
| SRR9715739 | Root | 22.554 |
| SRR9715742 | Root | 27.680 |
| SRR9715743 | Root | 28.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 87.843 |
| SRR8749028 | MeJA induced 9h | 29.521 |
| SRR8749029 | MeJA induced 9h | 49.427 |
| SRR8749030 | Uninduced | 32.392 |
| SRR8749031 | Uninduced | 13.699 |
| SRR8749032 | Uninduced | 17.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 106.493 |
| SRR8400027 | Control - Root | 109.582 |