Gene detail

Gene detail information of Glyur000543s00030825

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74000.1	2.00E-63	strictosidine synthase 3
NR	XP_004488398.1	0	PREDICTED: strictosidine synthase 3-like [Cicer arietinum]
COG	NP_249984.1	2.00E-34	hypothetical protein PA1293 [Pseudomonas aeruginosa PAO1]
Swissprot	tr\|P92976\|SSL11_ARATH	1.00E-77	Protein STRICTOSIDINE SYNTHASE-LIKE 11 {ECO:0000303\|PubMed:10777701} (Precursor)
trEMBL	tr\|G7IQL0\|G7IQL0_MEDTR	8.00E-171	Strictosidine synthase {ECO:0000313\|EMBL:AES65894.1}

Sequence

Transcript Sequence

>Glyur000543s00030825.1
ATGTTGAACACTACCAGCAACATAGCAGTTATTAGTGGGATCTTAATCTCCCTCCTCTGTTCACCATCCATAGTTGTCTCTTGTAGGTTACTCGATAGGCTCTATCTTCCATCATCATTAACAGGACCCGAGTCACTAGCATTTGACTCCATTGGTGGAGGGCCTTACACTGGTGTTTCTGATGGAAGAATTATGAAATATGATGAACCAAATGGTCGTTTCGTTGAATTTGCTCACACTTCACCAGATAGGAACAAGACAATGTGCGATGGCATTTCTGACTTCTCAGAACTGCAAGAAACATGTGGGAGGCCTTTGGGGTTGAGTTTCAATTACAACACAGGCGAGTTATACATAGCTGATGCTTATTTTGGGCTTGTGAAGGTTCCTTATGATGGAGGTACTGCGACCCAACTTGTTGCTGATGATGGACAAGGCAATCCTTTTGGGTTTCTTGCTGGTTTGGATGTAGACCCTGCAACTGCAATCGTTTATTTCACGGAAGCTAGCTCTGGTTTCAAGATCAGGGATCTCCAGCAACTGCTAAATAGCACGGATTGTTCTGGAAAACTATTCAGATATGATCCAGCAACCAACGAAACCACAACATTGCTCAGTGATCTTTCTGTGGCAACTGGGGTGGCAGTAAGTAACAATGGTTCATTTGTTCTTGTTAGCGAGTACCTGGCAAACAGAATCCAGAGATTCTGGCTTACAGGACCTAAAGAAAATACTTCAGACATATTCTTAGAGCTTCCTGGAAGACCAGATAACATAAAAAGGAACTCAGGGAACGAGTTTTGGGTAGCAATGAACTATCCCTTTGGGTCACCACCACCACCAATTCCTCCTGTTTTGCCTCTAGGACTCAGGGTCAATGAGGAAGGTGTGATTATACAGGCTGTGCCTCTTGTTGAGGAGTTTGGCACTGAATCAGTCAGTGAAGTTCAAGAGTCTGAGGGAAAACTCTACGCTACATCCCTTCATGTTTCTTATGCTAACATTCTCACGCTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00543	60373	62784	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function
GO:0016844 strictosidine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000543s00030825.1	PF03088.11	Str_synth	154	241	6.40E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.238
SRR1783600	control	1.255
SRR1783602	moderate drought stress	4.249
SRR1811619	moderate drought stress	4.447

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.914
DRR006520	Root Summer glycyrrhizin high producing strain	0.808
DRR006521	Root Winter glycyrrhizin high producing strain	2.107
DRR006522	Root Winter glycyrrhizin high producing strain	1.647
DRR006523	Root Summer glycyrrhizin low producing strain	1.146
DRR006524	Root Summer glycyrrhizin low producing strain	1.035
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.259

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.104
SRR2868004	Drought Stress (root)	1.466
SRR2967015	Control (root)	1.217

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.108
SRR9715740	Leaf	0.217
SRR9715741	Leaf	0.627
SRR9715739	Root	0.556
SRR9715742	Root	0.274
SRR9715743	Root	0.423

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.694
SRR8749028	MeJA induced 9h	0.631
SRR8749029	MeJA induced 9h	0.368
SRR8749030	Uninduced	0.703
SRR8749031	Uninduced	0.278
SRR8749032	Uninduced	0.987

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.073
SRR8400027	Control - Root	1.218