Gene detail

Gene detail information of Glyur000542s00017568

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04260.1	0	plastid transcriptionally active 3
NR	XP_003590907.1	0	Pentatricopeptide repeat-containing protein [Medicago truncatula]
Swissprot	tr\|Q9FMQ1\|PP376_ARATH	1.00E-08	Pentatricopeptide repeat-containing protein At5g12100, mitochondrial (Precursor)
trEMBL	tr\|A0A072VNI7\|A0A072VNI7_MEDTR	0	Plastid transcriptionally active protein {ECO:0000313\|EMBL:KEH42973.1}

Sequence

Transcript Sequence

>Glyur000542s00017568.1
AAACCGGGTTGGATTCGGTATCGTTTCGGTTAAAAAAAGAAAAAAAAACAACATTCATTTTGGGGTACTCTGTNGCACTTTTTTCAATTCGCGGTCTGCCTTATCATCGGTGCATCATCACCCAGGAAGCTATTGGGGACACTGTCACCGGTTCACTCCCTCACAAACCAAAACCCACCACACTATCAACTGAATACATGCATTCATGTCAACTGTTATCTTCCCTTACAGTTACAGTTACGGTTACGGTTACACCTATGTCCCGTTCAAATTGAACCGCTGCTCATCTCCCCGAACCATAGCAGTTCGCGCTGCGGTTTCATCTCCGGAGAAGCGAACCAGGAAGAAGAAGCAGGGGAAGGATGACGACAGTTCACTCGAGAACAGCCTCCGGTTCAGTTTCATGGAGGAGCTCATGGACCGGGCCAGGAACCGTGACTCAGCTGGCGTGTACGAGGTCATGTACGACATGATTGCTGCCGGTCTGAACCCTGGTCCCAGGTCGTTTCACGGCTTGGTAGTGTCGCATGTCCTCAACGGTGACGAACAAGCGGCGATGGATTCGCTAAGAAGAGAGTTGGGTGCGGGGCTTCGACCGGTTCACGAAACCTTCGTTGCATTGGTAAGGTTGTTTGGGTCTAAAGGGCATGCCACTACTGGTCTAGAAATACTCGGAGCCATGGAAAAGCTGAATTATGATATTCGTCACGCNTGGATAATACTTATTGAGGAACTTGTTCGGAACAAGCATTTGGCAGATGCTAACAGAGTGTTCTTGAGGGGTGCCAAGGGTGGCCTCAGGGCTACTGATGAGGTTTATGATCTTCTAATCGAGGAAGACTGCAAAGCGGGAGACCATTCNAATGCTTTAGAAATCTCCTACGAGATGGAGGCAGCTGGACGAATGGCAACAACCTTCCATTTCAATTGCCTCCTCTCTGTGCAGGCTACCTGCGGAATACCTGAAATAGCTTTTTCAACATTTGAGAACATGGAATATGGAGAAGATTATATGAAGCCTGATACAGAAACATACAATTGGGTTATTCAAGCATATACTAGAGCTGATTCTTATGACAGAGTACAAGATGTTGCCGAGTTGCTTGGCATGATGGTTGAAGATCACAAGCGCATACAGCCAAATGTGAAGACCCATGCGCTGTTAGTGGAGTGTTTTACCAAGTACTGTGTAGTACGAGAATCTATTAGGCATTTCCGTGCACTTAAAAACTTTGAAGGGGGTACAAAAGTTCTACACAATGAAGGGAACTATGGAGATCCTCTTTCTTTGTACGTTCGGGCATTATGTCGGGAAGGTAGGATTGTTGAAATGCTTGAAGCTTTAGAAGCTATGGCCAAAGATAACCAGCCAATCCCCCCACGGGCAATGATCTTGAGCAGAAAATACCGGACATTAGTGAGCTCCTGGATTGAACCTTTACAAGAGGAGGCTGAACTTGGCTATGAGGTTGATTATATTGCTAGGTATATTGCTGAGGGTGGCCTTACTGGAGAGCGCAAACGGTGGGTGCCTCGAAGTGGTAAAACACCTCTAGATCCTGATGCTGATGGATTTATATACTCAAACCCAATGGAGACCTCCTTCAAACAAAGATGCCGTGAGGAGTGGAAGTTGCACCATAAAAAGCTTCTGAAGACCTTGAAGAATGAAGGACTTGTAGCTTTAGGGGATGGTGTATCTGAATCTGATTATATTAGAGTGCTGGAGAGGCTAAAGAAAATCATAAAGGGGCCTGAACAGAATGTTTTAAAGCCTAAGGCTGCTAGTAAAATGCTTGTGTCTGAATTGAAGGAAGAACTAGAAGCACAAGGTTTACCTATTGATGGAACCAGAAATGTTCTTTACCAACGTGTACAGAAAGCAAGGAGAATAAATCAATCTCGTGGTCGGCCCCTTTGGGTTCCTCCTATGGAAGAGGAGGAAGAAGAGGTGGATGAAGAGCTGGATGCATTAATTTCACGTATAAAGCTGGAGGAAGGAAATACAGAGTTCTGGAAACGTCGCTTCTTAGGAGAAGGCTTAACTGGTGATAATGGAAAGCCAATGATTGCAGGTGAATCAGAGTCCCTTGAAGTTCAAGACGATGTTGATGCTGTGGAAGATGCTGCAAAAGAGGTTGAAGATGATGAAGCAGATGAGGAGGAGGAGGAGGAGGAGGAAGCAGAACAAGCAGAAGAGGAAGTAGAACCAGGAGAGAACCAAGATGTAGAAAGGATAAAGGAAAAGGAAGTTGAAGCTAAAAAGCCCCTTCAAATGATTGGGNTTCAATTATTGAAAGATTCTGACTTACCCACTGCCACATCTAAAAAGTTTAAAAGAAAAACAGCTGCTCGGCTCATGGTTGAGGATGATGCTGATGATGATTGGTTTCCTTTGGACATATTTGAGGCATTTAAGGAAATGAGGAACCGGAGAGTGTTTGATGTATCAGACATGTATACCTTAGCAGATGCTTGGGGATGGACATGGGAGAGAGAACTGAAGAACAAACCTCCTCGTAGATGGTCACAGGAATGGGAAGTTGAGTTGGCAATCAAAGTTATGCAGAAGGCAATAATATGGACTTCTTTGCTGAATGAGGTTCTGGGATGTATTACACAGGTCATAGAATTGGGAGGGACACCAACTATTGGAGATTGTGCTATGATTTTGCGTGCAGCTATAAGAGCACCTCTACCTTCAGCTTTCTTGACAATTTTGCGGGCAACTCATGGTCTTGGCTATAAGTTTGGGAGACCACTTTATGACGAGGTCATCTCTCTCTGCCTTGATCTTGGGGAACTAGATGCAGCTGTTGCCGTAGTTGCAGACTTAGAGACCACTGGGATCTCGGTTTCAGACCAGACTTTGGATAGGGTGATTTCTGCTAAACAAACTATTGACAACGCTTCAAACAGTGACATGGATGCACGATTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00542	141498	148483	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000542s00017568.1	PF13812.1	PPR_3	237	265	0.5
Glyur000542s00017568.1	PF13812.1	PPR_3	274	306	0.086
Glyur000542s00017568.1	PF02037.22	SAP	528	560	3.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.149
SRR1783600	control	6.196
SRR1783602	moderate drought stress	11.519
SRR1811619	moderate drought stress	11.316

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.298
DRR006520	Root Summer glycyrrhizin high producing strain	16.971
DRR006521	Root Winter glycyrrhizin high producing strain	10.375
DRR006522	Root Winter glycyrrhizin high producing strain	10.214
DRR006523	Root Summer glycyrrhizin low producing strain	17.416
DRR006524	Root Summer glycyrrhizin low producing strain	17.315
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.802

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.412
SRR2868004	Drought Stress (root)	9.300
SRR2967015	Control (root)	10.660

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.701
SRR9715740	Leaf	32.718
SRR9715741	Leaf	21.243
SRR9715739	Root	1.398
SRR9715742	Root	11.003
SRR9715743	Root	9.209

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.377
SRR8749028	MeJA induced 9h	6.027
SRR8749029	MeJA induced 9h	4.399
SRR8749030	Uninduced	1.039
SRR8749031	Uninduced	0.630
SRR8749032	Uninduced	1.229

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.519
SRR8400027	Control - Root	15.319