Gene detail information of Glyur000542s00017563 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G18460.1 | 2.00E-171 | Protein of Unknown Function (DUF239) |
| NR | XP_006606443.1 | 0 | PREDICTED: uncharacterized protein LOC100808774 isoform X1 [Glycine max] |
| trEMBL | tr|I1NIL2|I1NIL2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G36380.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00542 | 117741 | 121915 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000542s00017563.1 | PF14365.1 | DUF4409 | 69 | 209 | 6.40E-40 |
| Glyur000542s00017563.1 | PF03080.10 | DUF239 | 215 | 445 | 9.60E-94 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.770 |
| SRR1783600 | control | 0.940 |
| SRR1783602 | moderate drought stress | 1.131 |
| SRR1811619 | moderate drought stress | 1.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.194 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.208 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.609 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.733 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.991 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.864 |
| SRR2868004 | Drought Stress (root) | 2.820 |
| SRR2967015 | Control (root) | 2.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.694 |
| SRR9715740 | Leaf | 1.352 |
| SRR9715741 | Leaf | 1.062 |
| SRR9715739 | Root | 0.234 |
| SRR9715742 | Root | 1.416 |
| SRR9715743 | Root | 2.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.087 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.023 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.872 |
| SRR8400027 | Control - Root | 1.523 |