Gene detail

Gene detail information of Glyur000542s00017561

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64780.1	0	ammonium transporter 1;2
NR	XP_003590923.1	0	Ammonium transporter [Medicago truncatula]
COG	YP_002463744.1	6.00E-87	ammonium transporter [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|O04161\|AMT12_SOLLC	0	Ammonium transporter 1 member 2
trEMBL	tr\|I1LBS6\|I1LBS6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G31110.1}

Sequence

Transcript Sequence

>Glyur000542s00017561.1
ATGGCGGCTTCTCTATCTTGCTCAGCCACCGACCTCGCCCCTCTCATCAGCGCCACCGCCACCGCGAACGCAACCGCCGCCGCTAACTACCTCTGCACCCAATTCGATGCAATCTCGAAGAAGCTCAGCGACACCACCTACGCGGTGGACAGCACCTACCTCCTTTTTTCAGCCTACCTTGTCTTCGCCATGCAGCTGGGTTTCGCCATGCTCTGCGCCGGCTCCGTCCGAGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGTGGCCTCTCCTACTACCTCTTCGGCTTCGCTTTCGCCTTCGGAGCACCCTCCAACGGCTTCATCGGCCGCCACTTCTTCGGCCTCAGGGATTACCCTTCCCCTTCCGGCGACTACAGCTTCTTCCTCTACCAGTGGGCCTTCGCCATAGCCGCCGCCGGTATCACCAGCGGCTCCATCGCCGAGAGGACCCAGTTCGTCGCCTACCTCATCTACTCCTCTTTCCTCACCGGTTTCGTCTACCCCATCGTCTCCCATTGGTTCTGGTCCTCCGACGGTTGGGCCAGCCCGACCCGAACCGACGGAAGCGTCTTATTCAGGTCTGGCGCCATCGACTTCGCTGGCTCCGGAGTAGTTCACATGGTTGGCGGCATAGCAGGGCTTTGGGGGGCTTTCATTGAAGGCCCAAGAATTGGCCGGTTTGACCGGACGGGCCGGTCCGTTGCATTGCGCGGACACAGCGCTTCCTTGGTCGTGCTAGGTTCGTTTTTATTGTGGTTCGGTTGGTACGGTTTTAATCCCGGTTCGTTTTTGACCATCGCGAAAGGGTACGGTAACAGCAGAGGGGGGTATTACGGTCAATGGAGTGGTATAGGGAGGACAGCTGTCACAACGACATTGGCTGGGTGCACAGCGGCACTGACAACNCTGTTCAGCAAACGGTTATTGGCGGGACACTGGAACGTGATTGACGTGTGTAACGGCCTCCTTGGCGGTTTCGCGGCCATTACGTCGGGTTGCTCCGTGGTAGAACCTTGGGCAGCGATCGTGTGCGGGTTTGTGGCGGCGTGGGTTTTGATTGGGCTCAACATGTTGGCGGCTAAGGTGGAGTACGATGACCCTCTGGAGGCGGCGCAGCTTCACGGAGGGTGTGGCGCGTGGGGGGTGTTGTTNACGGGGCTGTTTGCGAAGCGGGAGTACGTGGAGGAGGTTTACGGCGTNGTTGGGAGGCCGTACGGGTTGTTGATGGGTGGCGGGGGAAGGCTGGTGGCGGCGCAGGTGGTTGAGATATTGGTGGTGTGTGGGTGGGTGACGGCGACGATGGCGCCGTTGTTCTATGGGCTTCATAGGATGAAACTGTTGAGGATCTCGAGGGATGATGAGACGGCGGGGATGGATTTGACAAGGCATGGTGGGTTTGCGTATGCCTATCATGATGAAGATGATGATGGGTCGATTAAGAAAACGGGGTTTATGATGGGTAGGATAGAGCCCGCTAGTATATCTCCCTCCACCCTCGACACAACACCGGACCAGTCTTCGCCGTTGCCAATGACTGCAANGACAGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00542	114889	116463	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015696 ammonium transport

GO:0072488 ammonium transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0008519 ammonium transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000542s00017561.1	PF00909.16	Ammonium_transp	53	476	3.40E-134

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.093
SRR1783600	control	0.069
SRR1783602	moderate drought stress	0.145
SRR1811619	moderate drought stress	0.145

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.067
DRR006520	Root Summer glycyrrhizin high producing strain	0.068
DRR006521	Root Winter glycyrrhizin high producing strain	0.071
DRR006522	Root Winter glycyrrhizin high producing strain	0.138
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	127.113
DRR006526	Leaf Summer glycyrrhizin high producing strain	123.836

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.608
SRR2868004	Drought Stress (root)	1.650
SRR2967015	Control (root)	2.413

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	62.629
SRR9715740	Leaf	81.025
SRR9715741	Leaf	28.193
SRR9715739	Root	0.023
SRR9715742	Root	0.107
SRR9715743	Root	0.094

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.045
SRR8749028	MeJA induced 9h	0.030
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.835
SRR8400027	Control - Root	0.111