Gene detail information of Glyur000542s00017559 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G37360.1 | 1.00E-95 | |
| NR | NP_001241140.1 | 2.90E-165 | uncharacterized protein LOC100797094 [Glycine max] |
| trEMBL | tr|C6TCG5|C6TCG5_SOYBN | 1.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G36400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00542 | 108012 | 110927 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000542s00017559.1 | PF11282.3 | DUF3082 | 232 | 308 | 2.80E-06 |
| Glyur000542s00017559.2 | PF11282.3 | DUF3082 | 232 | 308 | 2.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.215 |
| SRR1783600 | control | 2.259 |
| SRR1783602 | moderate drought stress | 1.389 |
| SRR1811619 | moderate drought stress | 1.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.710 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.768 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.203 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.096 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.650 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.768 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.666 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.382 |
| SRR2868004 | Drought Stress (root) | 6.315 |
| SRR2967015 | Control (root) | 6.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.676 |
| SRR9715740 | Leaf | 26.974 |
| SRR9715741 | Leaf | 29.201 |
| SRR9715739 | Root | 1.317 |
| SRR9715742 | Root | 1.539 |
| SRR9715743 | Root | 1.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.052 |
| SRR8749028 | MeJA induced 9h | 1.660 |
| SRR8749029 | MeJA induced 9h | 1.983 |
| SRR8749030 | Uninduced | 0.578 |
| SRR8749031 | Uninduced | 0.721 |
| SRR8749032 | Uninduced | 0.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.020 |
| SRR8400027 | Control - Root | 6.355 |