Gene detail information of Glyur000542s00017558 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G38890.1 | 4.00E-78 | Nucleic acid-binding, OB-fold-like protein |
| NR | KHN14806.1 | 6.25E-127 | Exosome complex component CSL4 [Glycine soja] |
| COG | YP_007175331.1 | 4.00E-10 | RNA-binding protein [Caldisphaera lagunensis DSM 15908] |
| trEMBL | tr|K7LJV1|K7LJV1_SOYBN | 2.00E-127 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G31065.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00542 | 103249 | 106650 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000542s00017558.1 | PF14382.1 | ECR1_N | 9 | 48 | 1.90E-13 |
| Glyur000542s00017558.1 | PF10447.4 | EXOSC1 | 72 | 143 | 3.20E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.368 |
| SRR1783600 | control | 14.203 |
| SRR1783602 | moderate drought stress | 32.583 |
| SRR1811619 | moderate drought stress | 32.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.453 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.577 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.737 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.873 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.720 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.652 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.201 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.015 |
| SRR2868004 | Drought Stress (root) | 17.433 |
| SRR2967015 | Control (root) | 20.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.545 |
| SRR9715740 | Leaf | 11.550 |
| SRR9715741 | Leaf | 13.128 |
| SRR9715739 | Root | 10.812 |
| SRR9715742 | Root | 16.532 |
| SRR9715743 | Root | 15.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.436 |
| SRR8749028 | MeJA induced 9h | 17.057 |
| SRR8749029 | MeJA induced 9h | 30.116 |
| SRR8749030 | Uninduced | 11.920 |
| SRR8749031 | Uninduced | 6.643 |
| SRR8749032 | Uninduced | 14.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.422 |
| SRR8400027 | Control - Root | 28.527 |