Gene detail information of Glyur000542s00017557 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04300.1 | 6.00E-34 | RmlC-like cupins superfamily protein |
| NR | XP_003555565.2 | 1.44E-61 | PREDICTED: uncharacterized protein LOC100810390 [Glycine max] |
| COG | YP_113172.1 | 1.00E-24 | hypothetical protein MCA0659 [Methylococcus capsulatus str. Bath] |
| trEMBL | tr|I1NIL6|I1NIL6_SOYBN | 5.00E-62 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G36420.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00542 | 96514 | 97278 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000542s00017557.1 | PF05899.7 | Cupin_3 | 96 | 171 | 5.00E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.660 |
| SRR1783600 | control | 0.664 |
| SRR1783602 | moderate drought stress | 0.376 |
| SRR1811619 | moderate drought stress | 0.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.535 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.527 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.365 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.358 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.908 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.724 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.364 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.019 |
| SRR2868004 | Drought Stress (root) | 7.167 |
| SRR2967015 | Control (root) | 4.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.822 |
| SRR9715740 | Leaf | 6.278 |
| SRR9715741 | Leaf | 6.508 |
| SRR9715739 | Root | 0.306 |
| SRR9715742 | Root | 1.738 |
| SRR9715743 | Root | 1.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.701 |
| SRR8749030 | Uninduced | 1.909 |
| SRR8749031 | Uninduced | 3.950 |
| SRR8749032 | Uninduced | 2.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.103 |
| SRR8400027 | Control - Root | 2.616 |