Gene detail information of Glyur000542s00017555 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71270.1 | 0 | Vps52 / Sac2 family |
| NR | XP_004495559.1 | 0 | PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Cicer arietinum] |
| Swissprot | tr|Q94KD3|VP52A_ARATH | 0 | Vacuolar protein sorting-associated protein 52 A |
| trEMBL | tr|G7I669|G7I669_MEDTR | 0 | Vacuolar protein sorting-associated protein {ECO:0000313|EMBL:AES61176.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00542 | 82602 | 92430 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000542s00017555.1 | PF04129.7 | Vps52 | 77 | 579 | 2.30E-213 |
| Glyur000542s00017555.2 | PF04129.7 | Vps52 | 77 | 579 | 2.30E-213 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.589 |
| SRR1783600 | control | 16.252 |
| SRR1783602 | moderate drought stress | 14.145 |
| SRR1811619 | moderate drought stress | 14.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.709 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.420 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.509 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.971 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.500 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.094 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.090 |
| SRR2868004 | Drought Stress (root) | 28.374 |
| SRR2967015 | Control (root) | 24.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.124 |
| SRR9715740 | Leaf | 18.963 |
| SRR9715741 | Leaf | 21.181 |
| SRR9715739 | Root | 2.508 |
| SRR9715742 | Root | 11.636 |
| SRR9715743 | Root | 10.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 90.599 |
| SRR8749028 | MeJA induced 9h | 36.331 |
| SRR8749029 | MeJA induced 9h | 70.072 |
| SRR8749030 | Uninduced | 22.079 |
| SRR8749031 | Uninduced | 53.869 |
| SRR8749032 | Uninduced | 48.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.108 |
| SRR8400027 | Control - Root | 35.465 |