Gene detail

Gene detail information of Glyur000542s00017548

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54650.2	2.00E-105	Methyltransferase family protein
NR	AES61180.2	0	methyltransferase domain protein [Medicago truncatula]
COG	YP_007161983.1	5.00E-06	type 11 methyltransferase [Cyanobacterium aponinum PCC 10605]
trEMBL	tr\|G7I673\|G7I673_MEDTR	0	Methyltransferase domain protein {ECO:0000313\|EMBL:AES61180.2}

Sequence

Transcript Sequence

>Glyur000542s00017548.1
ATTCCTGGTGTCAGGAGGAATANCATCCATCATCAGTAAACATACAAGGCAAATTCACTCGACAATGGCGCACCTCCTCTTCNTCCAGAACACCACTAACCCGCGCACAACTAATTGCGATTCCAATCCCACCCATCCATATCCAGGGACCAAATCGCAAATTTTGCTTTTACAGACAACCAACGAGGATTGGAGAATGAGCTGTGAAGGCGAAGCAGAGTACTTCTGCAAGGACTTCGATTGGGAAGAAGTAAGATCAGAGGTGGAAGCAAACCCTCGTTTTCGCTACCACTTCGAACCCGCTTCCTCCTCCTCTTCTTATTCCACGCAATCGCAATCACCATCGCCAGATTCAGACGTGCAAGCTTGGAAGCAATTTCACACCCGTCATGCCTCCGGGAAATTCTTCAAGGAGCGCCGCTATTTGTTAAAGGAGTTCCCAGAACTAGTTTCCTCTCCCCCAAACTCTAACCCTAAGCTCTTGGAAATCGGTTGCGGCAATGGCAGTACTGCTCTTCCTATACTACGGGCCAACAAGGATGTTATTGTTTATGCATGCGACTGTAGTAATGAGACTCTTGAGAAGGCTAAGGAAATTATAGGTGCCACCGCAGATGCCTCTTTTAGTCATCGTTTCCATACATTTTGTTGTGATTTTTCCACTAATGAATTCCCAAACTGGTTGGCGTGCAACCCTTGCCGAGATAATTTTTTACAAAAACAGCCTTACTCTTTGTCAGATACCAAAGAGGATAACGGGCTGCGTCTTACCAATTCATATTCATTGGAAGAATTTGACTGTTGCGTTGGTGGTGTAGATTTTGTAACATTGATATTTACTTTATCAGCAGTACCGCTGGAAAGGATGCCAAGGTCCATCAAGGAATGTTTTACTGTGTTAAAACCAGGAGGCATGGTTTTATTTAGGGACTATGGCCTCTATGATATGACTATGCTTCGATTTGAGCCAGACAAGAGAGTGGGATTCAGGGAGTACCTGCGGTCAGATGGAACACGATCATATTTCTTTTGTTTGGATACTGTCCGGGACCTATTCTTGGGTGCAGGCTTCATTGAGCTTGAGCTTGATTATTGTTGTGTTAAGTCTGTAAATCGCCGGAAAGGGAAGAGCATGAGAAGAGTGTGGGTTCACGGGAAGTTCCAGAAGCCTGCACTTAGTTGTCAATGATCTCTCTTGGCATGCTGTGTGAAGTCCCGGAGAAATTGTACACTTGTTTGCTTTTATCCGTGATTGCTTTCTACATTGAAGAGTATAAAAGAGAGACAGGTAGAAAAGACGAGCAAGACTCTGTTTCTGTATTCCTTCCTCAATTTTGATGCGCTGAGACNCTGAAATGTTTATTATTGGATTGGATTGAAAAAGCAAAATATAGCAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00542	44473	59702	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000542s00017548.1	PF13489.1	Methyltransf_23	117	338	6.90E-13
Glyur000542s00017548.2	PF13489.1	Methyltransf_23	117	292	2.50E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.352
SRR1783600	control	19.475
SRR1783602	moderate drought stress	19.955
SRR1811619	moderate drought stress	19.345

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.163
DRR006520	Root Summer glycyrrhizin high producing strain	17.669
DRR006521	Root Winter glycyrrhizin high producing strain	20.222
DRR006522	Root Winter glycyrrhizin high producing strain	20.222
DRR006523	Root Summer glycyrrhizin low producing strain	11.315
DRR006524	Root Summer glycyrrhizin low producing strain	11.214
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.667

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.947
SRR2868004	Drought Stress (root)	26.790
SRR2967015	Control (root)	28.790

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.933
SRR9715740	Leaf	20.692
SRR9715741	Leaf	13.825
SRR9715739	Root	6.672
SRR9715742	Root	10.649
SRR9715743	Root	7.869

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	67.760
SRR8749028	MeJA induced 9h	20.949
SRR8749029	MeJA induced 9h	57.511
SRR8749030	Uninduced	31.674
SRR8749031	Uninduced	52.616
SRR8749032	Uninduced	71.496

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.613
SRR8400027	Control - Root	27.014