Gene detail information of Glyur000542s00017547 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14465.1 | 3.00E-60 | AT-hook motif nuclear-localized protein 20 |
| NR | XP_003536146.1 | 2.53E-117 | PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 9.00E-48 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|I1LBS0|I1LBS0_SOYBN | 9.00E-118 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G31020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00542 | 38226 | 39098 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000542s00017547.1 | PF03479.10 | DUF296 | 103 | 219 | 6.70E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 87.228 |
| SRR1783600 | control | 86.046 |
| SRR1783602 | moderate drought stress | 105.337 |
| SRR1811619 | moderate drought stress | 105.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.580 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 61.052 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 95.654 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 94.803 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.989 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 60.256 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.280 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 102.327 |
| SRR2868004 | Drought Stress (root) | 110.806 |
| SRR2967015 | Control (root) | 107.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.079 |
| SRR9715740 | Leaf | 0.073 |
| SRR9715741 | Leaf | 0.003 |
| SRR9715739 | Root | 168.879 |
| SRR9715742 | Root | 63.580 |
| SRR9715743 | Root | 78.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.085 |
| SRR8749028 | MeJA induced 9h | 29.191 |
| SRR8749029 | MeJA induced 9h | 25.709 |
| SRR8749030 | Uninduced | 16.871 |
| SRR8749031 | Uninduced | 7.697 |
| SRR8749032 | Uninduced | 16.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 107.181 |
| SRR8400027 | Control - Root | 91.009 |