Gene detail information of Glyur000542s00017545 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28500.1 | 3.00E-106 | |
| NR | XP_004495565.1 | 0 | PREDICTED: uncharacterized protein LOC101509923 [Cicer arietinum] |
| Swissprot | tr|Q9SR19|RAF2_ARATH | 2.00E-163 | Rubisco accumulation factor 2, chloroplastic (Precursor) |
| trEMBL | tr|V7BGJ8|V7BGJ8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW15998.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00542 | 26107 | 27456 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.506 |
| SRR1783600 | control | 13.507 |
| SRR1783602 | moderate drought stress | 15.250 |
| SRR1811619 | moderate drought stress | 15.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.004 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.787 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.960 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.438 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.394 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.176 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 125.448 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 122.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.190 |
| SRR2868004 | Drought Stress (root) | 2.687 |
| SRR2967015 | Control (root) | 3.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.703 |
| SRR9715740 | Leaf | 36.656 |
| SRR9715741 | Leaf | 23.318 |
| SRR9715739 | Root | 6.231 |
| SRR9715742 | Root | 7.561 |
| SRR9715743 | Root | 6.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.700 |
| SRR8749028 | MeJA induced 9h | 1.518 |
| SRR8749029 | MeJA induced 9h | 1.118 |
| SRR8749030 | Uninduced | 0.020 |
| SRR8749031 | Uninduced | 0.072 |
| SRR8749032 | Uninduced | 0.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.776 |
| SRR8400027 | Control - Root | 4.767 |