Gene detail

Gene detail information of Glyur000542s00017544

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56070.2	3.00E-74	rotamase cyclophilin 2
NR	ACG70968.1	1.08E-111	cyclophilin [Ziziphus jujuba]
COG	YP_005366669.1	5.00E-88	peptidyl-prolyl cis-trans isomerase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q38867\|CP19C_ARATH	1.00E-104	Peptidyl-prolyl cis-trans isomerase CYP19-3
trEMBL	tr\|B5LWR0\|B5LWR0_ZIZJJ	4.00E-112	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU000493}

Sequence

Transcript Sequence

>Glyur000542s00017544.1
ATGTCAAATTCAAAGGCAAGACCAAATCGTTCGGTTCATCCAACGATCGGCGCCAGGATCAGATCAAGGAAACTTCACAGTATGTCAAACCCGAAAGTTTTCTTTGACATTCTAATTGGAAAGGCGAAAGCTGGGCGAGTGGTAATGGAACTGTTTGCAGATGCCACTCCCAAAACAGCCGAAAACTTCAGAGCCCTCTGCACTGGTGAAAAGGGGATTGGAATATCTGGGAAGCCTCTGCATTACAAAGGATCCAAATTCCACCGCATTATTCCACAGTTCATGTGTCAGGGAGGAGATTTTACCCGAGGGAATGGGACTGGAGGAGAGTCCATTTATGGCTCTAAATTCTCAGACGAGAATTTCAAGCTCAAGCATACAGGGCCCGGTATTCTTTCCATGGCGAATGCTGGACCCGATACAAATGGCTCCCAGTTCTTTATTTGCACTGGTAGGACACCTTGGCTTGATGGGAAACATGTTGTGTTTGGAAAAGTTGTTGATGGCTACAGTGTGGTGAAGGAGATGGAGAAGGTGGGTTCACAGAGTGGGACGACGTCAGAAACTGTTGTAATTGAAGATTGTGGGCAGATAGCAGAGCATTGACGCTCGCTCGCTGGAATAATGTTTAGTGGGATATTCAATAAACTTACTTGTATTACTGCTCAATGTTAAAACACGGATTTTGTGCCATTCTTATGTAGTGACAGATCAAATGTTTTTGGATGCTGCCATTAAGTAAAATCGCGTATAGCTTACAGGTTATTGCCACATGCTTGAGTAAAATCGATTATCTTGGACATAGATATGCATAAATTCATCACAAGGCCTTCTGGATGATTTCATAATATTTCCCTCTTTTACATAATATGAGACCTAGTCTGATTCTACTCCAGTGATCAATGAGCATATCAAATATTTAGAAGTACCACAAACACAGAAACACTAATTTACAGTATCGTCTCTCCAATTTGTTTGAAGGTGCTGTGTATTTTAAAATTATCTACTCCAATCATCAAGACAAAGCTTTGTGAATAAGCACACATGACAAGTGAAGGTACTAATATGGAAAATTGCAAATCCTGAACAGACAGATGTTTAATTTAATGCGATCGGCTATATTATTCACCTTTTAATCAACCGTACAAGAGAAGACAAAAACGATTAGATCCTTCTATTAAGTTTGCAAAAAACAAAAGAAAATTGCAACTAATCTCAAATTAATAGAGCCATATTCTGCATAACCAAAAAGAAAGGGTAACGAAGAAAGGCAAGGGATTGAAGCTCAAAGTTGACTGAACTTCCAAAATCTTTACTCGAGAGAACCACAGAATGTCCTCCTGAACTGAATGAATCTCCATTTGCAACAAATGGTTTTCTATCCTTTCAATCCCAGTCTTCATCACTCAACTGATCACCATCCTCTTCCCTAGGCGGCCTAACAACCAAAACCACAGTTGCTAAACTCTCATTGACACCATTTTGCTTCAAACCCAAACCCCTTTCCACCTTCAAACCCCTTTTCTCACCATCAACAACACTCACCAAATAAAACCCATCATCAGAATCCACCTCCCTCCTACTCCTATCAGCCACCACCAATATAGGCTCCTCCTTATACCACCTATTGGCCTTCCAAGGCAACACCCTCGCATCCACAAACGACACAACAACGCCTCCTTTCCCCAAACCCACCACAGGGTCCCAACCCGGTAACGCCACCCACCTCTCCCACCCCTTCTCCGCCACCACCACACCAAACTCCCCTTCACTCCTCATCTCAAAAGGCGCCTCCAAAATCTCCCCCTCCTCCGCCTTACACACCGGCAACACAACCACCGTAGTCGCCTCAGCCACCTCACCAACCCTCAACCTCACCACCGGAACACGCACCCTCGCCACGGCAACATCGCCTTCATCTTCCTCCTCCTCACCGCTCTTCCCTCTCAGTTCCTCCAAGACCGTTTTTTTAGCCCTCTCTGTTTCCGCGACGCTCAGCGCCATTTCCAGCGCTGAAGTTCTCTGTTCCGAAGGGTTTCTGTGTTCCTTTCCCTGCCTGTAATACATGAAAGAGAGACAGTCTCCGGGGAGAGTGTAATCGAAGAACTCCCAACACTTCTCGCCGCGTCTTCCGGGGAAATCCTTCATGGCGCGTGCGAGTTCGTTGGCACCCTTGCCGTCGAACTTGTTCTCGATGATGAAACGCGCTGCGGAGGCGCGTTGCGACGCGCTGAGGAGGCGAATCTCGTAGAGGAGTTCGGCGCCGCCGGTGTCGAAGAAGGAGATGAGGTCGGGGTCGGTGTTGGTTTGTACGAGGGAGTCGCGAACCTGTGCCGCGACGATGAGGCGGTTCTGCTCGACACCGGTAATGCCGGTTGCCTCTTCGATGTTTGGAGGGGAGAAGCCTTCGCGGATGAGGGAGGTTATGAGTGGGGCGTACTCGTACCACAGGCCAAGCCGGTTGGCCAGTATCTCGAAGCGGGAAGGGATGTCGAGGTTCCCGAATTTTGAGGGGATGGAGGTTGTTGGGGGAGGCCTGAACGGTTGATACAGTTGTTGCTGAGGTGGATTTGATGAAGGGTTGATGATGGCTGAGATGGGTTTGAGGAAATGTGCAGCACGGTGAGTGGNGGATGTGGATGAGGGTAAGAGGAGGAGGTTCCCCTTGTTTATAAGAGGGGACACGGATTTTAGATTCAGAGAATTTACAGTGACGGAGAGTGAGAGCGAAGCCATCTTGCACAGTGCAGACTCCAAAGGAGAGTATGAGTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00542	26069	29575	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000413 protein peptidyl-prolyl isomerization

GO:0006457 protein folding

molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000542s00017544.1	PF00160.16	Pro_isomerase	39	196	8.40E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.464
SRR1783600	control	16.653
SRR1783602	moderate drought stress	15.370
SRR1811619	moderate drought stress	15.370

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.351
DRR006520	Root Summer glycyrrhizin high producing strain	30.757
DRR006521	Root Winter glycyrrhizin high producing strain	19.248
DRR006522	Root Winter glycyrrhizin high producing strain	18.721
DRR006523	Root Summer glycyrrhizin low producing strain	25.023
DRR006524	Root Summer glycyrrhizin low producing strain	24.674
DRR006525	Leaf Summer glycyrrhizin high producing strain	81.273
DRR006526	Leaf Summer glycyrrhizin high producing strain	80.268

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.054
SRR2868004	Drought Stress (root)	23.234
SRR2967015	Control (root)	20.157

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.420
SRR9715740	Leaf	78.553
SRR9715741	Leaf	37.977
SRR9715739	Root	23.223
SRR9715742	Root	23.016
SRR9715743	Root	23.259

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.268
SRR8749028	MeJA induced 9h	24.465
SRR8749029	MeJA induced 9h	41.609
SRR8749030	Uninduced	7.554
SRR8749031	Uninduced	8.246
SRR8749032	Uninduced	8.493

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.666
SRR8400027	Control - Root	28.805