Gene detail information of Glyur000541s00027328 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52590.1 | 3.00E-45 | Putative thiol-disulphide oxidoreductase DCC |
| NR | AFK41955.1 | 6.03E-88 | unknown [Lotus japonicus] |
| COG | YP_006419194.1 | 4.00E-19 | hypothetical protein Aeqsu_2728 [Aequorivita sublithincola DSM 14238] |
| Swissprot | tr|Q9SSR1|Y1259_ARATH | 6.00E-72 | DCC family protein At1g52590, chloroplastic (Precursor) |
| trEMBL | tr|I3SNW3|I3SNW3_LOTJA | 2.00E-88 | Uncharacterized protein {ECO:0000313|EMBL:AFK41955.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00541 | 116125 | 117912 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000541s00027328.1 | PF04134.7 | DUF393 | 59 | 151 | 7.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.593 |
| SRR1783600 | control | 6.535 |
| SRR1783602 | moderate drought stress | 17.040 |
| SRR1811619 | moderate drought stress | 17.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.184 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.155 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.207 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.507 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.236 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.022 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.624 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.084 |
| SRR2868004 | Drought Stress (root) | 25.234 |
| SRR2967015 | Control (root) | 26.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 50.171 |
| SRR9715740 | Leaf | 51.173 |
| SRR9715741 | Leaf | 46.983 |
| SRR9715739 | Root | 8.757 |
| SRR9715742 | Root | 9.992 |
| SRR9715743 | Root | 11.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.624 |
| SRR8749028 | MeJA induced 9h | 11.088 |
| SRR8749029 | MeJA induced 9h | 19.230 |
| SRR8749030 | Uninduced | 21.549 |
| SRR8749031 | Uninduced | 21.571 |
| SRR8749032 | Uninduced | 20.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.199 |
| SRR8400027 | Control - Root | 17.271 |