Gene detail information of Glyur000541s00027325 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17200.1 | 5.00E-50 | Pectin lyase-like superfamily protein |
| NR | XP_004486675.1 | 0 | PREDICTED: probable polygalacturonase At3g15720-like [Cicer arietinum] |
| COG | YP_003391696.1 | 2.00E-19 | glycoside hydrolase family 28 [Spirosoma linguale DSM 74] |
| Swissprot | tr|Q94AJ5|PGLR5_ARATH | 4.00E-49 | Probable polygalacturonase At1g80170 (Precursor) |
| trEMBL | tr|G7IUV8|G7IUV8_MEDTR | 0 | Polygalacturonase/glycoside hydrolase family protein {ECO:0000313|EMBL:AES68137.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00541 | 108106 | 112766 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000541s00027325.1 | PF00295.12 | Glyco_hydro_28 | 32 | 165 | 4.20E-23 |
| Glyur000541s00027325.1 | PF00295.12 | Glyco_hydro_28 | 168 | 295 | 4.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.063 |
| SRR1783602 | moderate drought stress | 0.122 |
| SRR1811619 | moderate drought stress | 0.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.290 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.134 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.355 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 110.495 |
| SRR2868004 | Drought Stress (root) | 45.149 |
| SRR2967015 | Control (root) | 35.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.069 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.034 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.076 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.121 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.074 |
| SRR8400027 | Control - Root | 0.785 |