Gene detail information of Glyur000541s00027324 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41475.1 | 1.00E-26 | Embryo-specific protein 3, (ATS3) |
| NR | XP_004486674.1 | 1.65E-54 | PREDICTED: uncharacterized protein LOC101515366 [Cicer arietinum] |
| trEMBL | tr|K7M3Y1|K7M3Y1_SOYBN | 5.00E-49 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G44155.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00541 | 102663 | 104243 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000541s00027324.1 | PF06232.6 | ATS3 | 48 | 126 | 2.60E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 959.562 |
| SRR1783600 | control | 981.164 |
| SRR1783602 | moderate drought stress | 370.302 |
| SRR1811619 | moderate drought stress | 388.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 976.424 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 965.430 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 87.678 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 83.259 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 177.463 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 177.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 98.122 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 92.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 331.884 |
| SRR2868004 | Drought Stress (root) | 126.515 |
| SRR2967015 | Control (root) | 118.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 33.809 |
| SRR9715740 | Leaf | 34.915 |
| SRR9715741 | Leaf | 33.653 |
| SRR9715739 | Root | 405.617 |
| SRR9715742 | Root | 454.932 |
| SRR9715743 | Root | 429.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.084 |
| SRR8749028 | MeJA induced 9h | 11.728 |
| SRR8749029 | MeJA induced 9h | 13.074 |
| SRR8749030 | Uninduced | 6.834 |
| SRR8749031 | Uninduced | 5.738 |
| SRR8749032 | Uninduced | 7.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 277.197 |
| SRR8400027 | Control - Root | 225.718 |