Gene detail information of Glyur000541s00027323 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15370.1 | 1.00E-71 | SNARE-like superfamily protein |
| NR | XP_004486673.1 | 5.63E-98 | PREDICTED: coatomer subunit zeta-1-like [Cicer arietinum] |
| trEMBL | tr|Q2HUA7|Q2HUA7_MEDTR | 5.00E-98 | Uncharacterized protein {ECO:0000313|EMBL:AFK39997.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00541 | 97931 | 101306 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000541s00027323.1 | PF01217.15 | Clat_adaptor_s | 1 | 137 | 0.00011 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.816 |
| SRR1783600 | control | 26.465 |
| SRR1783602 | moderate drought stress | 13.998 |
| SRR1811619 | moderate drought stress | 13.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.507 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.554 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.508 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.196 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.338 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.604 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.459 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.502 |
| SRR2868004 | Drought Stress (root) | 19.909 |
| SRR2967015 | Control (root) | 13.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.726 |
| SRR9715740 | Leaf | 8.141 |
| SRR9715741 | Leaf | 5.458 |
| SRR9715739 | Root | 6.110 |
| SRR9715742 | Root | 10.369 |
| SRR9715743 | Root | 6.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 46.547 |
| SRR8749028 | MeJA induced 9h | 21.694 |
| SRR8749029 | MeJA induced 9h | 41.456 |
| SRR8749030 | Uninduced | 18.317 |
| SRR8749031 | Uninduced | 21.255 |
| SRR8749032 | Uninduced | 16.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.442 |
| SRR8400027 | Control - Root | 36.836 |