Gene detail

Gene detail information of Glyur000541s00027316.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32300.1	4.00E-179	S-domain-2 5
NR	XP_003543680.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5-like [Glycine max]
COG	YP_001958461.1	9.00E-23	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q8RWZ5\|SD25_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (Precursor)
trEMBL	tr\|I1M5U0\|I1M5U0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G44220.1}

Sequence

Transcript Sequence

>Glyur000541s00027316.1
ATGGGGTTATTGAGATGTGGAAGTGGAAACTTGTTTTTGTTTGTGCTCCTTCTTCTGTTTAGAATCATCCTCAGCCATGCCAAAGATCAACACATTGGCCAGATATATCCTGGCTTCAGTGCATCTCAGCTTGAGTGGATTGACCACAATGGTTTCTTCTTGCTATCCAAAAACTCAGCCTTTGCTTTGGGGTTCTTTATCCCCTTGGATGTTTCATTGGTTGTCTTAGTAATCACTCACTTGAGTAACGTAGGCCTTCTCATCAGAAACACTGATAGATTTGTGTTTGACCATAGTAAGAATAACGGCACGGTTTGGTCGACAAACACAACGGGACAAAAAGTGAGATCCATGGAATTGCTGGACTCAGGGAACTTGGTGTTGCATAGTGGTGAAAATGGGAGGACAGTGCCTGTTTGGCAGAGTTTTAGCTACCCTACTGATACCCTTTTGGAGGGTCAAGCCTTTGTTGAAGGAATGAGACTCAAAAGCTTCCACAGCCACATGAACTTGACTCATTACCTTGGCTATGTAGCAGGTGATTTGGTTCTCTATGCAGGGTTTGAAACCCCACAAGTGTATTGGTCCCTATCAGAGGAAGCCCAGAGTTCAAAGAATGCCACCGCCACCACCGGTGGAAAGTCACTGTGGGCAGCAACTTTGGACCCCAATGGTGCAATCTCTTTCTATGATCTTAACATGGGAAAGTCTTCCAAGCCTGAGTCCTTCAAAATACCACAAGACCCTTGTGGCATTCCTGAGCCTTGTGACCCTTACTATGTTTGCTTCTATGAAAACTGGTGCGAATGCACTACACTTCTCAGATCACGTTTCAATTGCAGGCCTCCCAAAGTCTCAACCTGTTCTAGGAAGCTTGATTACTTTGCAATTAAGTACGTCGCGCCGGTTTTGAAATCAACACTGGATGCTTGTAGAGATGCATGTTTAGGAAACTGCTCTTGCCTTGTGCTTTTCTATGAAAACAGTACCGGTAGATGCTTCCATTTCGATCAGACCGGTAGCTTCCAACGCTATAAGGGGAACGCCACAACGAGTGGTTATGTTTCATATATGAAGGTCTCCATTGATGGGGATGGAATAAATGGCAACAGAATGATTGTCATGATCATTCTTACACTTCTGATTATAGCTGGTCTCATAACAGGATTCTGGTACTACTACTACTACTACAACAAGAAAGAGGAGAATTTTGATAAGTATTATAATACTCAAGAAGACACATTGGAGGAAGATGATTTCTTTGACAAAAGTCTCTCTGGGGTGCCTGCACGTTTTACTTTTGGTGCTCTTGCAAGAGCAACTAAGGACTTCTCAATGAAGATTGGAGAAGGAGGTTTTGGCTCAGTGTATCTTGGTGTGCTTGAACATGATGGAACCACTTCACAGTTGGCTGTGAAGAAACTTGAAGGGGTAGGACAAGGAGCAAAAGAGTTCAAAGCAGAAGTATCCACAATTGGAAGCATTCACCATGTTCATTTGGTAAAGCTTAAAGGTTTCTGTGCTGAAGGGCCTCATAGACTTCTTGTCTATGAGTACATGGCAAGGGGTTCTTTGGACAAATGGATCTTCAAGAACAGTGAGAACAGCTTCTTGTTGAATTGGGACACAAGGTACAACATTGCAATCGGCACGGCGAAAGGGTTGGCATATCTTCATGAGGAGTGTGAAGTTAGGATTATCCATTGTGATATCAAACCACAGAATGTTCTCCTTGATGCTAACTTCATGGCCAAGGTTTCGGATTTCGGATTGGCTAAGCTAATGAGCAGAGAACAAAGCCATGTCTTCACAACTCTTAGGGGAACAAGAGGGTATCTAGCTCCTGAATGGATTACCAACTATGCAATTTCTGAGAAGAGTGATGTGTTCAGCTATGGAATGGTATTGCTTGAGATTGTTGGTGGAAGGAAGAACTATGATCAATGGGAAGGACCAGATAAAGCACATTTTCCTTCTTATGTGTCAAGAATGATGGAGGAAGGGAAACTGAGAGAAGTTGTTGATAAAAGGATAGATGTTGATCATGAGAAGGATGAGAGAGTTTTGATTGCTCTAAAAGTTGCTCTTTGCCCTGTACTTGATCCACCTCCATTGTCTCAATCAAATGCTTATTATTCAGCTTTCTTGAAAATGAGTAGTGGTGAAGCTACTTCTTCATCAGGTGGACAGGGTGGTGAAAACCGAAGAGAGATCAACATTTTAGTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00541	24506	27602	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000541s00027316.1	PF01453.19	B_lectin	100	158	3.60E-14
Glyur000541s00027316.1	PF00069.20	Pkinase	446	649	4.10E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.106
SRR1783600	control	13.076
SRR1783602	moderate drought stress	11.467
SRR1811619	moderate drought stress	11.477

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.032
DRR006520	Root Summer glycyrrhizin high producing strain	11.835
DRR006521	Root Winter glycyrrhizin high producing strain	2.228
DRR006522	Root Winter glycyrrhizin high producing strain	2.192
DRR006523	Root Summer glycyrrhizin low producing strain	1.990
DRR006524	Root Summer glycyrrhizin low producing strain	1.892
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.812
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.797

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.098
SRR2868004	Drought Stress (root)	7.450
SRR2967015	Control (root)	9.700

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.990
SRR9715740	Leaf	3.269
SRR9715741	Leaf	3.429
SRR9715739	Root	6.407
SRR9715742	Root	15.605
SRR9715743	Root	14.694

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.285
SRR8749028	MeJA induced 9h	4.320
SRR8749029	MeJA induced 9h	2.953
SRR8749030	Uninduced	2.973
SRR8749031	Uninduced	1.900
SRR8749032	Uninduced	1.798

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.612
SRR8400027	Control - Root	13.343