Gene detail

Gene detail information of Glyur000540s00023689

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58530.1	3.00E-48	Glutaredoxin family protein
NR	XP_006591249.1	9.10E-134	PREDICTED: uncharacterized protein At5g39865-like isoform X3 [Glycine max]
COG	NP_360785.1	4.00E-06	glutaredoxin-like protein grla [Rickettsia conorii str. Malish 7]
Swissprot	tr\|Q9FLE8\|Y5986_ARATH	2.00E-37	Uncharacterized protein At5g39865
trEMBL	tr\|I1LLQ6\|I1LLQ6_SOYBN	3.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G29280.1}

Sequence

Transcript Sequence

>Glyur000540s00023689.1
GTGTTTTTTAGAAACCTACAGATGGGAACTGGGAAGTACCTATAATTACTCCATACATTTATACAAAAATAATTAATAATTAACAAGTGCCTCTAAATCTTTCCTCATTTATCCTTTCTCCCTCTTAAGCCTCCCATAAAAGCAAAATAAACCAACCCCTCAACTACCTTAACCACCCCCACAATCTCCCTCTCTCCCCTTTAACCCAGCTGCTCCAAACTGGCAAACTGTCTTCCTCCTCCCTCACCCTCTAACTCCTCACCTCTCTCACACACTCTCTCTCTCAAACAAAATTCAAAATCACCCACTTCTTCATATCCTTCCTCAATCACCAAAATTCAAACTTTAGACAACCAAATTCTACCATCTATTCCAAACAGACAAAACAACACCCAAAATCCCCCATTTCCTACTTCATCCAAAAAAAAAACCCACCTTTCTCCTCCAAAGTCTCCCAACAAACAAAGAAAAAAAAATAGAAACTTTGTTCCATCCCAGTTCACACCTTCAATGTGGCGACCATGGAACAAATCACATTCATCTTCCTTCTCTTGTTCCTCCTTCAAAGACATTCAANCCCTCTTCATAGACGAACCCTCTACTACCAAGCCCAAACCCTCTATATTCCACCGAGTCACACTCGCCAACTCGCTCCTCCGAGCCTGGTCAACTCAACCCAAACTCACTTATTCTCTCTCCCCACTCGCACCCGATGACACACACGCAGCCCAACCGCACCCTCCTGCCTCCATTCCCTGTTCGGAGCAGCGCGTGGTAATCTACTTCACGAGCCTGCGCGTGGTTCGAGCCACGTACGAGGACTGCAAAACGGTGCGTTCCATCCTGCGTGGGTTCCGTGTCGCGCTGGACGAGCGAGACGTGTCCATGGACTCGAGTTTTCTTTCGGAGCTTCGTCGGGTCTCGGGTTGGAAAATCGGGTTGACCCTGCCCCGAGTTTTTATTAACGGGAGGTACGTGGGTGGGGCCGAGGAGGTGAGGTGGCTGCACGAGAGTGGCGAGCTCAGGAAGCTTCTCGAAGGGTTGCCCGCAGCGGATTCGCATTTGCACGCGTGCCACGTGTGCGGCGATCATAGGTTTGTCCTTTGCGGGGAATGCTCTGGTGCGCGCAAGGTGTACGCGGAGAAGGGTGGGTTCAAGACTTGTACGGCTTGCAATGAGAGTGGCCTCATCAGGCCAACAAGTCCTACTAATAATGAGCTGTTCAAATACGAGGACAAGATGTTGGATTGTCGTGACTGTCCCATGGGTTTAGAAAGTTCAAAAATATATGGACCTTATAGACAACGTGGGAAAGATCATGATCAACCTGGAGGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00540	112259	117576	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045454 cell redox homeostasis

molecular_function

GO:0009055 electron carrier activity

GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000540s00023689.1	PF00462.19	Glutaredoxin	89	156	5.00E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.095
SRR1783600	control	9.303
SRR1783602	moderate drought stress	9.799
SRR1811619	moderate drought stress	10.031

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.411
DRR006520	Root Summer glycyrrhizin high producing strain	14.151
DRR006521	Root Winter glycyrrhizin high producing strain	0.666
DRR006522	Root Winter glycyrrhizin high producing strain	0.794
DRR006523	Root Summer glycyrrhizin low producing strain	12.952
DRR006524	Root Summer glycyrrhizin low producing strain	13.074
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.562
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.098

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.677
SRR2868004	Drought Stress (root)	5.229
SRR2967015	Control (root)	6.346

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.273
SRR9715740	Leaf	4.984
SRR9715741	Leaf	7.292
SRR9715739	Root	12.784
SRR9715742	Root	14.521
SRR9715743	Root	14.737

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.725
SRR8749028	MeJA induced 9h	3.417
SRR8749029	MeJA induced 9h	1.744
SRR8749030	Uninduced	3.975
SRR8749031	Uninduced	0.350
SRR8749032	Uninduced	0.941

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.907
SRR8400027	Control - Root	17.828