Gene detail

Gene detail information of Glyur000540s00023687

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30105.1	2.00E-123
NR	XP_003552940.1	0	PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like [Glycine max]
COG	YP_005082071.1	4.00E-29	outermembrane protein [Pseudovibrio sp. FO-BEG1]
Swissprot	tr\|P0C895\|Y2010_ARATH	5.00E-161	LRR repeats and ubiquitin-like domain-containing protein At2g30105
trEMBL	tr\|K7MQ74\|K7MQ74_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G06630.2}

Sequence

Transcript Sequence

>Glyur000540s00023687.1
TGTTTTTGAGATTATTGATGAGAGAGAGGTGTTCTTAGAACAATAGAACATGGTCTTCGTCGAGTAAANCATATTAAGCTTCGTATCGCATCATAGGAGACGGTGAAATGGAAAGCGGGTGTGGCAGTGGCATTGGTGGAGCAAGCGAGGCCAATTCGGAAGCGACCATAANAATCAGCGTCAAGTTCAGTGGCACCTCCATACCCATCTCAATCTCACCCCAATCAACCATCAAGGAACTCAAGTCCCTTCTTCTACCTGCCACCAATGTCCTCCCACGCGGCCAGAAGCTCATCTTCAAAGGAAAGGTTTTGGAAGACCCCATGACGTTGGCAGCATCTAATTTGAGTAATGGGTCTAAGCTCATGCTTGTGGCTTCCCAGGGTTTATATCAAGGGGATGGTCCTGTCTTGAAGAATGCTCAGGTTGCACCCAGATCGAGGAAAGATAGCCACTCAGGCTCTAGTAATGACATGAAGAAAATTCCTGTTAAGAACAGGTTGGAACGGTGGAAAGCAACAAGAGTTATAGCATTATCTGAATGCAACTTGGAGGCCATACCTGATGAAGTGTGGGTTTGTGGATCTTCTGCAAGAGTTCTAGATTGCAACAACAATTCAGTTAAAAATGTCCCTGCTGAAATTGGACGTCTTACTGGTCTAGAAAAACTACTTATTAATGCCAATGACATATTGGATGAATCAATTTACTGGGAAGGGCTAACAACTCTGAAGTACCTAACAGTATTATCATTGAACCATAACCATTTAACTACTTTGCCATCTGCGCTGGGATCTCTCACCTCTTTGAGGGAGCTGCATGTCTCCAATAATAAATTGACTGGCCTTCCTAATGAAATAGGGCATCTGACACAATTAGAAGTTTTGAAAGCCAACAATAATAGGATGAGTAAAATCACTGAATCTATAGGGAACTGCCATTCTCTTGTTGAGGTTGATTTCTCATCAAATTTTCTGTCAGAATTGCCAGAGACATTCAGTAGTTTGAGCAATTTGAAGGCATTGCATCTTAGTAACAATGGGATGAAATCCCTGCCTTCTAAACTATTCAAGACTTGCCTGCAGCTCTCCACACTGGATCTNCATAATACAGAAATAACAATTGATCTCCTTCGCCAGTTTGAAGGGTGGGACAATTTTGATGAGCGCCGTCGCTCAAAGCATCAGAAACAACTAGATTTCCGAGTTGGAGTTTCTAGAGATTTTGATGAAGGTGCTGATAAAAACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00540	105469	109320	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000540s00023687.1	PF00240.18	ubiquitin	28	92	5.40E-14
Glyur000540s00023687.1	PF12799.2	LRR_4	210	248	2.50E-09
Glyur000540s00023687.1	PF13855.1	LRR_8	279	337	1.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.138
SRR1783600	control	14.946
SRR1783602	moderate drought stress	14.718
SRR1811619	moderate drought stress	14.359

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.574
DRR006520	Root Summer glycyrrhizin high producing strain	9.304
DRR006521	Root Winter glycyrrhizin high producing strain	5.443
DRR006522	Root Winter glycyrrhizin high producing strain	5.220
DRR006523	Root Summer glycyrrhizin low producing strain	7.350
DRR006524	Root Summer glycyrrhizin low producing strain	7.118
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.023
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.729

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.897
SRR2868004	Drought Stress (root)	18.462
SRR2967015	Control (root)	17.094

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.086
SRR9715740	Leaf	13.521
SRR9715741	Leaf	10.999
SRR9715739	Root	5.339
SRR9715742	Root	9.043
SRR9715743	Root	6.921

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.056
SRR8749028	MeJA induced 9h	8.852
SRR8749029	MeJA induced 9h	4.195
SRR8749030	Uninduced	6.937
SRR8749031	Uninduced	1.958
SRR8749032	Uninduced	3.038

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.331
SRR8400027	Control - Root	26.418