Gene detail

Gene detail information of Glyur000540s00023685

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58520.1	0	Protein kinase superfamily protein
NR	KEH34381.1	0	Serine/Threonine-kinase DDB-G0267514-like protein, putative [Medicago truncatula]
COG	YP_001958461.1	8.00E-21	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	3.00E-37	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A072UYA6\|A0A072UYA6_MEDTR	0	Serine/Threonine-kinase DDB-G0267514-like protein, putative {ECO:0000313\|EMBL:KEH34381.1}

Sequence

Transcript Sequence

>Glyur000540s00023685.1
TTTCATTGTGTCAGAACAAAAATATGGCAATGTCAGAAATCTGAATGAAACCAGCACTTCCATAACAACAACAATCACTGTCCTCCTCTTTTTCCTTCTGAATCTTCTTCTCCATTCTCCCCAAATCACTTCATTTGGGGGTTGGAAGCAGAACACAAGAGAATGGCCGCAGCCTTGGAGTGCTGGTCGAGGCGCGGCAACAGCGACGAGGACATGGTGGAACAGGTACAGGTCCTCATGGAACACAACCCAACCTCCCAAGTACCCAAGGACCCTTCCCTCCTCCACAAGAAGCTTCACAAGCTCTCCCGCAACGTTTCCGAGGCCATAGCCTCCCTCAAGAACACCCTCACCCTCAACCTCGACTCCTCCAAACCTGACACGTGTCGCAGCAACCTCGTTTGGGCTACCGTTGTCCGCAACCTCACCCAGCTCTACCCCGGTAGCCAGCTCCCCGAGAAGCTCATGTCCAACATTCGCAAGCACTATGATTCCTTGCCTCTCAGTTATTCTCAAGCGGGGTTTGATGTGAAAGAAGTGTTTCTTCACATCAAGCTGATGGAGCAAGCTTTGGAAGATGAGCAGGCGGCGATTTTGATTCAAGAGGAGTGTGATGGCGAGATGCAGCTTCAGGGTTCTCTGTTCAAGTTGACATTTGCTTGCAACTCTCCGATTTCNTGGCCTGCGATGTCAAGTGCGTTGGATAGTTCTTCCATTTGCTGCAAGAAGATTCAGATCTTTGAGAAGAAAGGTTTCACCCTTGGGATTGTACTTCTACTTGTTCTGTCTGGGACTGGACAAGATAAGTTGGTCAGGACCCGGGTTGAAAGCGCTCTCAAGTTTGCCATGAAGAAGCCGAAAGCCAGTGTTGTGAAGCTTCCCTTTGGGCTTTGTGGATGCCAAGAGGAGAACTCCAAGGGGAGAGAACTTGGAGAGATCGAAGAAGATGGTGGCAATGCGTACTGCGGTAATGGGTTTGAGAATTTGAGCCAAAAGATTCAGCTTCAGGTGCCCTTGCCTAGTTCATCATTTCTTGTATCGGTAGATGAATGGCAGACTATTCAGACAGGTGGGGATGAAATAGAGAAATGGTTGTTGAACTCGGATAGTCTCGAGTTTTTAGAACAGATTGGACCCAATTCGTATAAGGGGGCCTACATGGGGAAAAGAGTTGGCATTGAGAAGCTCAGAGGGTGTGACAAAGGTAACTCGTATGAGTTTGAGCTCAGGAAAGATCTGCTAGAACTGATGACATGTGGGCATGGAAATATTTTGCGGTTTTGTGGTGTTTGTGTAGACGACAATCATGGGTTATGTGTAGTGACGAAATTCATGGAAGGTGGATCTGTTCACGACTTAATTTCAAAGAACAAGAAGCTTCAGACCAAGGATATTGTAAGGATCGCGGTGGATGTGGCTGAGGGGAGCAAGTTTATGAATGATCATGGTGTTGCATACAGAGACCTTAATACACAGAGGATTCTATTGGATAAATATGGGAATGCTTGCTTGGGAGATATGGGTATAGTCACTGCCTGCAAGAGTGCCCAAGAGGCAATGGAGTANGAAACTGACGGTTACCGGTGGCTAGCTCCGGAGATAATTGCTGGTGACCCAGAGAGTGTGACAGAGACATGGATGAGCAATGTTTATAGTTTTGGGATGGTAATTTGGGAGATGGTAACTGGTGAGGCAGCCTATTCAGCATATTCACCTGTGCAGGCAGCAGTGGGCATTGCTGCTTGTGGCCTTAGACCTGAGATCCCCAAGGACTGTCCTCAAACTCTAAAGTCTCTTATGACAAAGTGCTGGAACAACACCCCTTCAAAACGCCCCCAGTTCTCTGAGATTTTAACAATGTTGCTGCGACCAAAAAAACAACAATAGGTAAAAATTTGCTATAGGTCTTTGTGGAATCTAATCTGTTGATATGGTAATTGATACCAAAACACCCCTTCTTGTCAAGGGAATTCCATACGCAATCATGATTCATGAACCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00540	91128	94986	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000540s00023685.1	PF07714.12	Pkinase_Tyr	353	567	1.80E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.328
SRR1783600	control	7.409
SRR1783602	moderate drought stress	6.940
SRR1811619	moderate drought stress	6.910

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.811
DRR006520	Root Summer glycyrrhizin high producing strain	11.575
DRR006521	Root Winter glycyrrhizin high producing strain	4.664
DRR006522	Root Winter glycyrrhizin high producing strain	4.555
DRR006523	Root Summer glycyrrhizin low producing strain	14.783
DRR006524	Root Summer glycyrrhizin low producing strain	14.575
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.597
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.439

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.149
SRR2868004	Drought Stress (root)	18.843
SRR2967015	Control (root)	23.326

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.649
SRR9715740	Leaf	5.092
SRR9715741	Leaf	3.848
SRR9715739	Root	10.546
SRR9715742	Root	8.248
SRR9715743	Root	7.713

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	57.283
SRR8749028	MeJA induced 9h	90.629
SRR8749029	MeJA induced 9h	49.634
SRR8749030	Uninduced	19.294
SRR8749031	Uninduced	14.255
SRR8749032	Uninduced	14.834

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.872
SRR8400027	Control - Root	12.813