Gene detail

Gene detail information of Glyur000540s00023682

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G58510.1
NR	XP_004500304.1	PREDICTED: rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Cicer arietinum]
trEMBL	tr\|A0A072UXW3\|A0A072UXW3_MEDTR	Rab3 GTPase-activating protein catalytic subunit {ECO:0000313\|EMBL:KEH34382.1}

Sequence

Transcript Sequence

>Glyur000540s00023682.1
GTAAATGTTATTTTGATCTATTCCCATTCAGATCTCAGAGATGCTTGCAATGTTTTGATCTCACCGGAAAAGAAAAAGGAAAAAAAAAAGTGAAAGTGAAAAATCGAATAGTTCCACTTGGATAACAATAATACAGACACATGAAGACGATGATACGCATTGCGTGAACGTTCTCGTATATTGGATTCGATGGCCTCCTCCAGCAGCACCAGCAAGAAGATCCAAGCTGATGCTACTGACGACAAACACACTGAAGTAGAAGAAGAAGAAGAAGATGAAGAAGAAGGCCTTGAGCATTTTGACGATTTCACCCTTGCTTCTTCCTGGGAACGGTTTATTTCTGAAATAGAGGCTGTTTGTCGGCTTTGGATGTCTGATGGTCCTAATAATTTATTGGAAAAAGGCGCAGTTCTTTTGGAATATTCCGGTAATTTGTACAAGGTGACATCTGAAATGAAGTATGCCATGAAAAGTTACTCCATGGAGTACTATTTTGAGACCAACCCTAGTGGCAAACCTGCGGACTGGAATTTTGATTTGCATGATCTGCAGTTATGTTTTGGCGTAAAGGAGTTTTTGGTCATTGCTCCTCAGAGTGCAAGTGGTGTGGTTCTTGATGCGCCAGAGGCTAGCAAGCTCTTGACATTTGTTCCAGTTCATGACCCTTCTCGGAAAGCTTATATTGGAATTCAGAGCATGGGTACTGTATTTACTAGAAGGTTTGAAGCAGATCGAATTGGTAGTCAGGTTCCAATAAAACTTATGCATTTGGAGGGACTGTACGAGTTATTTGTATCTAAGTTNGCATACTCCACATTGGATCTATCTGTTCATAATTTCAAAGTCCGATTTGCAATGAAGCTAACATTCAGAACACTTCCCTATGACGAGGACTATATGAAAGACTTTGATGCCAAAATTACCAAATCTGGTGAAAATCTTACTGGTGAAACATCCAATGGGATGCAGTGGGATGATGATTGTTCTTGGAGTGCATGGTATTCTGCAGAAGATCCTGTTAAAGGTTTTGAACTGATTGCAATATGGTCAGAGAAGATGATTGAAAGTTCTATGGAAATGGCTGAACTGGAAAATGCTTCACCTCATGAAGCTGAGAAGTGGTTGATCTCTCCAAGACTTGAAGGTTCCAAAGATAATCGGATTGGATTTGCATCCCAGTTGCATCTTCTTGTTGATGCATTGCAAATGTCATTTGAGGCACAATTTATAGAAGATTTTGTTTCAGTTGAAAATCCGGGTTCCGATAATATGAAATCTTCAATGGTTATACCTTCACCCACTGTTAGAGATCGTGTGCTGAAAGAACTGTTTATTGAGGGTGTACAATTCTCAGATTTTGCTGATGGCGGACATAAGACTTCGCGAGCTATAAAAGGCGCACCTCTTGAATCTCTCTTTGCACAATTTTGTTTACATTCTCTTTGGTTTGGCAACTGCAATATACGTGCTATTGCTGTGCTATGGATAGAGTTTATCCGAGAGGTTAGGTGGTGTTGGGAAGAGTCACAACCATTACCTAGGATGCCAACTAATGGATCAATTGACCTTTCCACTTGTTTGATTAATCAGAAACTTCAGATGCTTGCAATATGCATTGAGAGGAAGTGTCAGATGAATGAAGATTATCAAGATTGTATTGGAAGTGTGGATCATATAGATTCTATGTCTGAGGAAGAAAGTGTAGTTGGGGATGACTCATTCAATATACAGACACCCAGTGAGGATTTTTCTGGGAAAGTTGACAGAAAGCCTGAAGATGTGGAACTTTTTAATGACAAAAAATCTTCAGACTTCACCAGGAGAGGTTCAGCTGGTATTGTTGATTCTATGANGCTTCTCAAGTCATACCAAAGTATGCATGCCCCATATACGCAGGAAGCACCTCTTATGACAGAAGACATGCATGAAGAGCGGATGCAAGCTGTTGAAGCCTTTGGTGATAATTTTTCTGCTCAGCTGGAAAGGGATATCTTAACTTCAGATATGTCAGCATTTAAAGCAGCAAATCCAGACGCTATTTTTGAAGATTTTATTAGGTGGCATTCACCTGGGGATTGGGAAGGGGATGATGACCCTGAGGGCAGTGAACCATCATCATCCAGTGCTCTTGACACCAAGAAATCAAAAGATGGTTGGCCTCCACAGGGGAGGCTTTCCAAGAGAATGTCGGAGCATGGAAATTTGTGGAGAAAGATTTGGAATAGCGCACCTGCTCTTCCTGCTTCTGAACAGAAGCCTCTTCTTGATCCAAATAGAGAAGGAGAAAAAGTTCTTCATTATCTTGAAACCTTACAACCACATGCATTGCTTGAGCAAATGGTGTCTACTGCCTTCAGAGCAGCAGCCGACACAGTAAGTCAGACTAGTTATGGAGAACTGGAACAGATGGTGACTAAGATTCAGCAACTTTACCTTACCATGGCATCTGCTTTGAGGCCTCTACAAGTAAATCGATTGTCTGCAGACAGTGAGACTATTGAAGATTTAAGACGACTGTGTGTCGTTTTTGAACATGTTGAAAAATTACTGACTCTCGCAGCTTCTCTTCATCGCAAGCTAATACGAGCACCGCGCCTCTCCAGAGAAATTTTCAATGATTACTACAACTTTTATATTCCAGCAATGGGAACAGGCTTGACAAAAGACGTTGTTGAAAAGGAATTTGACAAGAAGCAAGGAGTAAGGGACCATGAAAGGGAAGTGTTGTCAAATATGTTTGTTCCTCCCACGGCGAACCAGTCTTGGAGAAAGGTTTTGAGCATGGGCAATCTTCTCAATGGTCATGAACCAATCCTCAGGGAGATTATTTTTTCGCTGCGCGATCGAGTGAAAAGTAATCACTATGCAGCTCGTAGTGGTAGTGTTTCTCAACAAGAAATTGAAACTTACAGAATGTATATATGTGGAACGTCTAATGACCTTCGCGTAGCACTTTCTGTTGTCTCGTGTGATTAATTTTGTCTTGTTTATTGGTTACAATGTTTTTTATGGAATGGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00540	76071	86868	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005096 GTPase activator activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000540s00023682.1	PF13890.1	Rab3-GTPase_cat	537	707	1.70E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.894
SRR1783600	control	14.014
SRR1783602	moderate drought stress	20.639
SRR1811619	moderate drought stress	20.422

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.059
DRR006520	Root Summer glycyrrhizin high producing strain	21.780
DRR006521	Root Winter glycyrrhizin high producing strain	15.877
DRR006522	Root Winter glycyrrhizin high producing strain	15.121
DRR006523	Root Summer glycyrrhizin low producing strain	24.293
DRR006524	Root Summer glycyrrhizin low producing strain	23.799
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.714
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.775

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.994
SRR2868004	Drought Stress (root)	35.974
SRR2967015	Control (root)	35.521

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.097
SRR9715740	Leaf	15.817
SRR9715741	Leaf	16.290
SRR9715739	Root	3.983
SRR9715742	Root	14.271
SRR9715743	Root	11.503

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.548
SRR8749028	MeJA induced 9h	71.899
SRR8749029	MeJA induced 9h	24.403
SRR8749030	Uninduced	78.425
SRR8749031	Uninduced	25.762
SRR8749032	Uninduced	28.855

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.473
SRR8400027	Control - Root	35.698