Gene detail information of Glyur000540s00023680 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07090.1 | 8.00E-67 | Protein of unknown function (DUF640) |
| NR | XP_003537309.1 | 5.80E-105 | PREDICTED: uncharacterized protein LOC100775798 [Glycine max] |
| Swissprot | tr|Q9LMK2|LSH6_ARATH | 2.00E-92 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 |
| trEMBL | tr|I1LLR3|I1LLR3_SOYBN | 2.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G29340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00540 | 68613 | 69320 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000540s00023680.1 | PF04852.7 | DUF640 | 41 | 160 | 2.00E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.897 |
| SRR1783600 | control | 41.547 |
| SRR1783602 | moderate drought stress | 44.665 |
| SRR1811619 | moderate drought stress | 42.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 65.786 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 66.493 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.625 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.103 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 79.137 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 79.648 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.831 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.321 |
| SRR2868004 | Drought Stress (root) | 20.734 |
| SRR2967015 | Control (root) | 24.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.814 |
| SRR9715740 | Leaf | 1.196 |
| SRR9715741 | Leaf | 0.255 |
| SRR9715739 | Root | 52.637 |
| SRR9715742 | Root | 22.644 |
| SRR9715743 | Root | 26.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.766 |
| SRR8749028 | MeJA induced 9h | 3.287 |
| SRR8749029 | MeJA induced 9h | 2.094 |
| SRR8749030 | Uninduced | 1.732 |
| SRR8749031 | Uninduced | 0.293 |
| SRR8749032 | Uninduced | 0.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.541 |
| SRR8400027 | Control - Root | 37.682 |