Gene detail information of Glyur000540s00023679 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07080.1 | 3.00E-75 | Thioredoxin superfamily protein |
| NR | XP_003599338.1 | 2.56E-148 | Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] |
| trEMBL | tr|G7J0S1|G7J0S1_MEDTR | 1.00E-148 | Gamma interferon inducible lysosomal thiol reductase {ECO:0000313|EMBL:AES69589.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00540 | 52166 | 55027 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000540s00023679.1 | PF03227.11 | GILT | 31 | 137 | 2.30E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 64.291 |
| SRR1783600 | control | 64.277 |
| SRR1783602 | moderate drought stress | 60.731 |
| SRR1811619 | moderate drought stress | 59.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 173.284 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 171.894 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 62.369 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 59.838 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 145.118 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 144.851 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 117.505 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 117.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.684 |
| SRR2868004 | Drought Stress (root) | 44.785 |
| SRR2967015 | Control (root) | 42.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.103 |
| SRR9715740 | Leaf | 30.912 |
| SRR9715741 | Leaf | 60.476 |
| SRR9715739 | Root | 5.838 |
| SRR9715742 | Root | 19.874 |
| SRR9715743 | Root | 15.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.929 |
| SRR8749028 | MeJA induced 9h | 20.025 |
| SRR8749029 | MeJA induced 9h | 13.033 |
| SRR8749030 | Uninduced | 31.120 |
| SRR8749031 | Uninduced | 18.506 |
| SRR8749032 | Uninduced | 14.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.659 |
| SRR8400027 | Control - Root | 33.628 |