Gene detail

Gene detail information of Glyur000540s00023678

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15080.1	9.00E-75	lipid phosphate phosphatase 2
NR	AES69587.2	1.45E-156	lipid phosphate phosphatase-like protein [Medicago truncatula]
COG	YP_001356881.1	4.00E-06	PAP2 family phosphoesterase [Nitratiruptor sp. SB155-2]
Swissprot	tr\|Q9XI60\|LPP2_ARATH	7.00E-112	Lipid phosphate phosphatase 2
trEMBL	tr\|G7J0R9\|G7J0R9_MEDTR	5.00E-157	Lipid phosphate phosphatase-like protein {ECO:0000313\|EMBL:AES69587.2}

Sequence

Transcript Sequence

>Glyur000540s00023678.1
ATAATAAACAGCTTATTCTATTTTCAGATCCTAATTAAGATTCGTTTCCTTCTGATAAAAAAGATCCTAATTAAGATGCAGTTATTCCTCAAATCGTTCACCAGACTCTGCCATTATCTGATGTTTCTGTCATAGCTTTGCGTTGGACACTGGGCGTGCGGTTTACGGAACGCACGTCCCTGTTCTTCTGTGTTTGTCCTTCTCATAAAGCTTTGTGTTTAGAGGTTCATTTCCTCTGTAGGCCATACTTGGAATTAAAAGATGGCTTTGCAATCACCAGGAGCCAGGTTGACACTGAGTCATATGCACGATTGGCTTATTCTTCTGCTTCTTGCTGTTATGGAGGGAGTCTTGAATATGATAGAACCTTTTCATCGCTATGTTGGGAAAGACATGATGACAGATCTTATGTTCCCATACAAAGAAAACACTATACCCATGTGGGGTGTCCCAATCCTCTCTATTCTCATCCCCATTCTCATCTTTCTTGCGTTTTACTTTGTCCGAAGGGATATCTACGATTTACACCATGCAATATTGGGTCTCATGTTTGCTAGCTTAATAACTGGAGTTATCACGGATTCCATTAAAGATGCTGTTGGTAGACCAAGACCAAACTTTTTCCAACGGTGTTTCCCTGACAAAGTACCGGTGTTTGATAAAGAAACTGGTGATGTTCTTTGTAATGGGATTAAGTCAGTTATAAAGGAAGGATACAAAAGCTTTCCTAGTGGGCATACTTCATGGTCCTTTGCTGGTCTTGGTTTCCTTTCATGGTATCTATCAGGGAAAGTTAGAGTGTTTGATCGTAGGGGTCATATTGCCAAACTTTGTCTAGTATTGCTTCCTTTGCTTATTGCTGCTCTTGTGGGAGTTACTCGAGTTGATGATTACTGGCATCATTGGACTGATGTGTTTGCTGGAGGTCTTATAGGTTGGGCGCCTCATGCATTTTTTTATATGAAGGAAGAGGGTGAATGTTCCTACCGAGGGAATCAAACTCCACATGACTTGTCCCTAGAGATGGAGGACATGGAAAGTGGGGAACGATATTAAATCATTGTTGATTTCTTTCATTGTTTCATAAATGGCAAGAAAATCATTTTTTCATCCGTGTTTTTTTTTTAATTTTAAAATGTAAAATAAAAATAAANATATCATTTTACTAATTATTAAAAAACGCATGGAGAGTGGAGACCCCCACTTGCACTAGAAGCTAAAAAAAATGTTCTCAACCTTACTTCTTTCATAATATGAATTTAATAAATTTAATCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00540	47369	51160	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000540s00023678.1	PF01569.16	PAP2	93	234	2.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.883
SRR1783600	control	1.859
SRR1783602	moderate drought stress	2.035
SRR1811619	moderate drought stress	1.844

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.670
DRR006520	Root Summer glycyrrhizin high producing strain	4.541
DRR006521	Root Winter glycyrrhizin high producing strain	2.888
DRR006522	Root Winter glycyrrhizin high producing strain	2.985
DRR006523	Root Summer glycyrrhizin low producing strain	6.279
DRR006524	Root Summer glycyrrhizin low producing strain	6.953
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.425
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.428

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.120
SRR2868004	Drought Stress (root)	11.916
SRR2967015	Control (root)	9.973

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.964
SRR9715740	Leaf	1.958
SRR9715741	Leaf	4.659
SRR9715739	Root	1.341
SRR9715742	Root	4.643
SRR9715743	Root	3.383

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.162
SRR8749028	MeJA induced 9h	6.440
SRR8749029	MeJA induced 9h	3.116
SRR8749030	Uninduced	5.415
SRR8749031	Uninduced	1.590
SRR8749032	Uninduced	1.424

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.101
SRR8400027	Control - Root	11.026