Gene detail

Gene detail information of Glyur000540s00023676

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58480.1	1.00E-164	O-Glycosyl hydrolases family 17 protein
NR	XP_004500308.1	0	PREDICTED: glucan endo-1,3-beta-glucosidase 9-like [Cicer arietinum]
Swissprot	tr\|Q9FGH4\|E139_ARATH	0	Glucan endo-1,3-beta-glucosidase 9 (Precursor)
trEMBL	tr\|I1LLR7\|I1LLR7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G29410.1}

Sequence

Transcript Sequence

>Glyur000540s00023676.1
ATGCCCACCATTTCTTGCTTCTTCGTCATGTTCACCTCCCTCGCCATTTGCAGCATGGCCGTTGTGGCTCAAGCTGTGGGTGTGAACTGGGGTACCATGGCTTCCCACCCTCTGCCACCCCCTAAGGTGGTGAAGCTCTTGAAGTCCAACAACATCAACAAAGTCAAGCTCTTTGATGCAAACTCTGCTGTCCTTCAAGCTCTTTCTGGGTCTAACATTGGTGTCACCGTGGGTATTCCTAACACTATGCTCCGAAGCTTGAACTCTTCCAAGAAGGCTGCGGATAACTGGGTCCATGATAATGTTACCCGCTACATATCCAATGGGGGCAGTGGAGCTCGAATTGAATATGTTGCTGTTGGTGATGAGCCATTTCTTAAAAGTTATGGTGAACAATTTCATCCCTTCACAATTGGAGCTGCTATGAACATTCAAGCTGCTTTAAAGAGAGCAAAATTGGATAGCAAAGTGAAAGTCGTGGTTCCATGCAGCTTTGATAGTTTTGAGTCCGGATCTAACCTGTCCACCGAAGTACATTTCAGGCCTGACCTCAACAAAACCATGATGGAGCTCCTCACATTTCTTGACAAGCATGGATCACCTTTCTTTGTGACCATTTCTCCATTCATAACCCTCCTTCAGACCAAAAACATTTCACTCGATTTTTCCCTCTTTAAAGAAACCGCACGCCCTCATAATTTTAGCCATAAAATATACAAAAATAGCTTCGACTTGAGCTATGATACAGTTGTTACTGTATTATCAAAAGTAGGATTTCCTAATATGGAAACTGTTGTGGCAAAGATTGGTTGGCCAACAGATGGAGCTGCCAATGCAAGCTNGTATCTCGCAGAAACCTTCATGAAAGGGCTTATAAACCACCTTCATAGTGACTTGGGGACTCCACTTAGACCACATCAGCCACCACATGAAACATACATATTTAGCCTTCTTGATGAGGACCAAAGAAGCATTGCTTCTGGAAACTTTGAAAGGCATTGGGGTTTATTCACTTTTGATGGCCAAGCAAAATACCATGTGGATCTTGGCCAGGGTTCAAAGAGCCTTGTGAATGCTCAAAATGTTGAGTATCTTTCACCTAAGTGGTGTGTTGTGAACAACAATAAAGACTTGTCTAATGCAACTGCCAGTGCTTTAGAGGCTTGTGCAAATGCTGATTGTACTGCACTATCTCCTGGTGGATCTTGCTTTAACATCAGCTGGCCTAGTAACATATCATATGCTTTCAATAGTTATTATCAGCAGCATGATCAGAAAGTTGAAAACTGTGACTTCGGCGGTCTTGGTTTAATCACAACCGTTGATCCGTCCATGGATCATTGCAGGTTTCCGATTGAGATTCGCACTTCTNATGCTGAGTTTTACAGGGTGTGTAATTTCCAATGGATGATTTTACTTGTAACAACCCTCTTGGCATCTTTTGGGGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00540	43648	46491	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000540s00023676.1	PF00332.13	Glyco_hydro_17	26	348	4.50E-66
Glyur000540s00023676.1	PF07983.8	X8	368	436	1.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.894
SRR1783600	control	1.874
SRR1783602	moderate drought stress	1.187
SRR1811619	moderate drought stress	0.948

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.070
DRR006520	Root Summer glycyrrhizin high producing strain	4.203
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.510
DRR006524	Root Summer glycyrrhizin low producing strain	1.458
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.381
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.350

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.856
SRR2868004	Drought Stress (root)	1.224
SRR2967015	Control (root)	0.950

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.377
SRR9715740	Leaf	0.172
SRR9715741	Leaf	0.045
SRR9715739	Root	0.774
SRR9715742	Root	1.205
SRR9715743	Root	0.611

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.062
SRR8749028	MeJA induced 9h	0.482
SRR8749029	MeJA induced 9h	0.401
SRR8749030	Uninduced	0.044
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.430
SRR8400027	Control - Root	2.654