Gene detail information of Glyur000540s00023673.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30130.1 | 4.00E-58 | Lateral organ boundaries (LOB) domain family protein |
| NR | XP_004500442.1 | 1.28E-94 | PREDICTED: LOB domain-containing protein 12-like [Cicer arietinum] |
| Swissprot | tr|Q8LBW3|LBD12_ARATH | 7.00E-78 | LOB domain-containing protein 12 |
| trEMBL | tr|G7J0R0|G7J0R0_MEDTR | 9.00E-94 | Lateral organ boundaries (LOB) domain protein {ECO:0000313|EMBL:AES69578.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00540 | 26313 | 27501 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000540s00023673.1 | PF03195.9 | DUF260 | 6 | 105 | 2.80E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.070 |
| SRR1783600 | control | 0.070 |
| SRR1783602 | moderate drought stress | 0.139 |
| SRR1811619 | moderate drought stress | 0.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.575 |
| SRR2868004 | Drought Stress (root) | 2.681 |
| SRR2967015 | Control (root) | 4.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.117 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.075 |
| SRR8749028 | MeJA induced 9h | 1.521 |
| SRR8749029 | MeJA induced 9h | 2.008 |
| SRR8749030 | Uninduced | 3.377 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.674 |
| SRR8400027 | Control - Root | 0.490 |