Gene detail

Gene detail information of Glyur000540s00023671

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19130.1	4.00E-89	S-locus lectin protein kinase family protein
NR	XP_003599324.1	0	Somatic embryogenesis receptor kinase [Medicago truncatula]
COG	YP_001958461.1	7.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|P17801\|KPRO_MAIZE	0	Putative receptor protein kinase ZmPK1 (Precursor)
trEMBL	tr\|G7J0Q7\|G7J0Q7_MEDTR	0	Serine/Threonine kinase, plant-type protein {ECO:0000313\|EMBL:AES69575.1}

Sequence

Transcript Sequence

>Glyur000540s00023671.1
ATGATGCGCATGGCCTCTTCGTTCTTATTCCCTCTCCTCCTTTTGGTTTTGCATTTTCAACATTCCTCTTCCTCATTCTCCCTCTCCGTGGAGAAACTCGAAGAAGACGTTATAGTCTCACCCAACCGCACATTCACCGCAGGCTTTTACCCCGTAGGGGAAAATGCTTATTCCTTCGCCATATGGTTCACCCAAGATGCCACCCTTGTTTGGATGGCAAACCGGGACCAACCGGTGAACGGAAACCGCTCCACGCTTTCCCTTCTCAAAACCGGTAACCTCATCNTAACCGACGCAGGCCAATTCAACGTTTGGTCCACAAACACCGCCTCTGACAAACCACTTGAGCTGCTTCTGTACGAAACAGGAAACCTCGTTCTCCTAGAGCACAACGACACTAACAATGGTTACAATTCAATTCTGTGGCAGAGCTTCGATTTCCCAACAGACACGCTCCTTCCGGAGCAAAGTCTCACGAGACACACGACGCTTGTTTCCTCCAAAAGCGAGAGCAACTACTCCTCTGGTTTCTACAAGCTCTTCTTCGACAACGACAATCTCCTCCGTCTTCTCTACGANGGCCCTCACGTTTCCAGCGTGTACTGGCCACCTCCNTGGCTTGTGAGCTGGGAAGCTGGTAGATCCACGTACAACAGCAGCAGGGTTGCAACACTGGATCGCTTTGGGAGCTTCAGTTCTTCAGATAATTACAATTTTAGGACAAGTGATTATGGGACAGTGCTTCAGCGAAGACTTAAACTTGATCACGATGGTGATGTTCGTGTGTATAGCCGGAAAGATGGAGAAGAGANGTGGTCAATCTCAGGGCAAGTTTACCAACAACCATGTAACATTCATGGGCTTTGTGGGCCCAATAGTACTTGCAGTTATGACCCAAGAACCGGTAGAAAGTGNTCGTGTCTTCCTGGCTATAGCAGGGTCGATCATCAAGACTGGTCNCAAGGGTGTAAACCAAGCTTCCAACTTTCGTGCAGCAACAACGAGACAGAGTCGAGATTCCAATTCTTACCCCATGTGGAGTTTTATGGGTANGACTTGGATTACCATGAAAATTACACATATAAACAATGTAAGCATTTGTGCTTGCGGTCGTGCGAATGCATAGGGTTCCAGTACAGCTTTGTGGAGGACCAGGGTGTGTCTACTTGTTACACAAAGACGCAGTTGCTAAATGGCCATCGTTCACCAAATTTCCCAGCATCACTCTTCTTGCGATTGCCCAAAANCAGTGCTGCTCTGTCTGATGTTGAAGATAACGGCTTGGATTGTTCGATAAGTATTGCAGCAATACAATTGAAAAGACCATATGTCGAAGCCAAAGAAAATGGATCGTTGAAGTTCATGCTTTGGTTCGCGAGTGGCTTGGGAGGAATTGAGGTCGTGTGCTTCTTTCTGGTGTGGTGTTTCTTATTTAGGAATGCTAAACAGTTTGGCGCAGATAAACAAGGGTATGTTCTTGCAGCAGCAACGGGATTTCAGAAATTCAGTTACTCCGAACTGAAACAAGCCACAAAAGGTTTCAGTCAAGAGATTGGAAGGGGTGCTGGNGGAANTGTNTATAAGGNNANATTATCAGATGATAGAGTTGCAGCAATAAAGCAGCTACATGAAGCAAACCAATTGGAAGGAGAGAGTGAGTTCCTTGCTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTGGGGTTACTGTGTAGAGGGCAAACACAGGTTGCTGGTTTATGAGTACATGGAGAATGGTTCTTTAGCTGAGAATATCTCTTCAGATGCTCTTGATTGGGGGAAGAGGTATAACATTGCTCTTGGAACGGCAAGGGGTCTGGCATATCTACATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATAAAGCCCCAAAATATACTTCTTGACTCCAATTACCAACCCAAAGTAGCGGATTTTGGCTTGTCTAAGCTNCTGCATAGGAACAATATCAACAATTCAAGCTTCTCAAGGATAAGAGGAACAAGGGGATACATGGCACCGGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTGGATGTTTACAGCTATGGGATTGTTGTTTTGGAATTGATAACTGGAAAGAGCCCAATGACAGGTATCCAAGTCTCAGATGGAGCAGAGACACAACATGAGAGGTTGGTGACATGGGTGAGGGAGAAAAGGAGAAAAAGATCAGAAGTGGGATCTTGGGTGGAACAGATCGTTGACCCTGCATTGGGATCAAACTATGACATAGTTCAAATGGAGACTTTGGCAACAGTGGCTTTGGATTGTGTAGAGGAAGAGAAAGACACAAGACCCAGCATGAGTNAAGTAGCTGAGAGGCTTCGAAGTCACGAACATGATTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00540	12576	14972	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000540s00023671.1	PF01453.19	B_lectin	68	171	1.20E-21
Glyur000540s00023671.1	PF00954.15	S_locus_glycop	230	313	7.90E-06
Glyur000540s00023671.1	PF08276.6	PAN_2	337	397	2.40E-05
Glyur000540s00023671.1	PF00069.20	Pkinase	515	788	1.50E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.992
SRR1783600	control	1.015
SRR1783602	moderate drought stress	0.453
SRR1811619	moderate drought stress	0.420

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.679
DRR006520	Root Summer glycyrrhizin high producing strain	11.941
DRR006521	Root Winter glycyrrhizin high producing strain	88.343
DRR006522	Root Winter glycyrrhizin high producing strain	85.546
DRR006523	Root Summer glycyrrhizin low producing strain	13.216
DRR006524	Root Summer glycyrrhizin low producing strain	13.341
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.220
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.191

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.452
SRR2868004	Drought Stress (root)	4.922
SRR2967015	Control (root)	3.364

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.348
SRR9715740	Leaf	4.352
SRR9715741	Leaf	3.182
SRR9715739	Root	0.300
SRR9715742	Root	3.374
SRR9715743	Root	2.949

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.532
SRR8749028	MeJA induced 9h	108.042
SRR8749029	MeJA induced 9h	96.062
SRR8749030	Uninduced	38.983
SRR8749031	Uninduced	106.220
SRR8749032	Uninduced	115.089

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.031
SRR8400027	Control - Root	1.802