Gene detail information of Glyur000540s00023670 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58490.1 | 2.00E-120 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_004500311.1 | 0 | PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] |
| COG | YP_002015379.1 | 2.00E-49 | NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271] |
| Swissprot | tr|Q9S9N9|CCR1_ARATH | 2.00E-77 | Cinnamoyl-CoA reductase 1 |
| trEMBL | tr|G7J0Q8|G7J0Q8_MEDTR | 0 | Cinnamoyl-CoA reductase-like protein {ECO:0000313|EMBL:AES69576.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00540 | 12235 | 20995 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000540s00023670.1 | PF01370.16 | Epimerase | 5 | 245 | 4.20E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.452 |
| SRR1783600 | control | 3.476 |
| SRR1783602 | moderate drought stress | 4.021 |
| SRR1811619 | moderate drought stress | 3.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.939 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.693 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 50.407 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 49.128 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.951 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.051 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 318.869 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 317.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.007 |
| SRR2868004 | Drought Stress (root) | 5.123 |
| SRR2967015 | Control (root) | 6.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 76.334 |
| SRR9715740 | Leaf | 130.476 |
| SRR9715741 | Leaf | 52.586 |
| SRR9715739 | Root | 7.554 |
| SRR9715742 | Root | 19.142 |
| SRR9715743 | Root | 17.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.634 |
| SRR8749028 | MeJA induced 9h | 75.750 |
| SRR8749029 | MeJA induced 9h | 54.005 |
| SRR8749030 | Uninduced | 23.177 |
| SRR8749031 | Uninduced | 66.073 |
| SRR8749032 | Uninduced | 44.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.121 |
| SRR8400027 | Control - Root | 18.837 |