Gene detail information of Glyur000539s00030597.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19250.1 | 0 | flavin-dependent monooxygenase 1 |
| NR | KEH37661.1 | 0 | flavin containing monooxygenase-like protein, putative [Medicago truncatula] |
| COG | YP_007059321.1 | 6.00E-62 | K+ transport protein [Rivularia sp. PCC 7116] |
| Swissprot | tr|Q9LMA1|FMO1_ARATH | 0 | Probable flavin-containing monooxygenase 1 |
| trEMBL | tr|A0A072V7P6|A0A072V7P6_MEDTR | 0 | Flavin containing monooxygenase-like protein, putative {ECO:0000313|EMBL:KEH37661.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00539 | 108653 | 116824 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00485 | FMO | EC:1.14.13.8 | Drug metabolism - cytochrome P450 | map00982 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000539s00030597.1 | PF00743.14 | FMO-like | 15 | 501 | 1.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.850 |
| SRR1783600 | control | 42.653 |
| SRR1783602 | moderate drought stress | 17.258 |
| SRR1811619 | moderate drought stress | 17.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 110.098 |
| SRR2868004 | Drought Stress (root) | 173.296 |
| SRR2967015 | Control (root) | 73.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.085 |
| SRR9715740 | Leaf | 0.422 |
| SRR9715741 | Leaf | 2.333 |
| SRR9715739 | Root | 41.232 |
| SRR9715742 | Root | 135.207 |
| SRR9715743 | Root | 115.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.010 |
| SRR8749028 | MeJA induced 9h | 0.059 |
| SRR8749029 | MeJA induced 9h | 0.002 |
| SRR8749030 | Uninduced | 0.495 |
| SRR8749031 | Uninduced | 0.410 |
| SRR8749032 | Uninduced | 0.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 320.045 |
| SRR8400027 | Control - Root | 429.998 |