Gene detail information of Glyur000538s00027564.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43210.1 | 1.00E-44 | Excinuclease ABC, C subunit, N-terminal |
| NR | XP_004516472.1 | 1.09E-93 | PREDICTED: structure-specific endonuclease subunit slx1-like [Cicer arietinum] |
| COG | YP_391372.1 | 1.00E-09 | excinuclease ABC subunit C [Thiomicrospira crunogena XCL-2] |
| trEMBL | tr|I1L5J7|I1L5J7_SOYBN | 6.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G36020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00538 | 143338 | 145523 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15078 | SLX1 | EC:3.6.1.- | Fanconi anemia pathway | map03460 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000538s00027564.1 | PF01541.19 | GIY-YIG | 41 | 115 | 1.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.888 |
| SRR1783600 | control | 10.853 |
| SRR1783602 | moderate drought stress | 18.207 |
| SRR1811619 | moderate drought stress | 17.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.093 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.414 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.330 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.966 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.233 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.031 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.582 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.761 |
| SRR2868004 | Drought Stress (root) | 11.636 |
| SRR2967015 | Control (root) | 10.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.724 |
| SRR9715740 | Leaf | 12.187 |
| SRR9715741 | Leaf | 9.696 |
| SRR9715739 | Root | 3.143 |
| SRR9715742 | Root | 2.633 |
| SRR9715743 | Root | 4.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.906 |
| SRR8749028 | MeJA induced 9h | 7.559 |
| SRR8749029 | MeJA induced 9h | 3.978 |
| SRR8749030 | Uninduced | 5.952 |
| SRR8749031 | Uninduced | 9.542 |
| SRR8749032 | Uninduced | 8.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.995 |
| SRR8400027 | Control - Root | 6.678 |