Gene detail

Gene detail information of Glyur000538s00027563

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13800.2	6.00E-137	pheophytinase
NR	XP_003534379.1	0	PREDICTED: uncharacterized protein LOC100802865 [Glycine max]
COG	YP_007079495.1	4.00E-33	alpha/beta hydrolase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9FFZ1\|PPH_ARATH	2.00E-167	Pheophytinase, chloroplastic (Precursor)
trEMBL	tr\|I1L5J6\|I1L5J6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G36010.1}

Sequence

Transcript Sequence

>Glyur000538s00027563.1
ATGGAAATCCTCTCATATAGTTCTGCACCATGCTGTCAAGTAGTGGAATCCAAGTGTAAATTGATTGACAGAAGAACCTTGAATTCACGTCAACCAAAGTTTCATAGGGTTGGACATGATGGAGTTAGAAGAATGAGTGCTCTTGAAGGGTTTAGAAGAATCAATTGCAAAGTCCTTTGTGGAAGTTCTGATGGGTATGTGATTAGTACTGAAGAGGATTCAACTGATAATATTTCAGAGATAGAAATAGAAGAGCCTGCTACAAAGTTTCTCATTCCTGGTCTTCCAGATGAGTCAAATGGTGAATCAGGTGGTGGTGCTCCAATAAGTAGTTGCTTTTGGGAATGGAAGCCTAAACTAAATGTACATTATGAAAAGGCTGGGTGTGAAAACTTGGGTTCCCCAAATGTTCTTTTTCTTCCTGGTTTTGGTGTTGGATCTTTCCATTATGAGAAGCAACTGAGGGATTTGGGCCGTGACAATAGAGTGTGGGCACTGGATTTTCTAGGCCAGGGAATGTCCTTGCCTTTTGAAGATCCAGCTCCTCACTATAAGAAAAGGGCTATGGAAAATGGAAATGCTTCTTCATGGGGCTTCGGAGATGAAACCAAACCGTGGGCGACTAAGCTTGTGTACTCTATCGATTTATGGCAAGAGCAAGTGGTGGGGGAACCAGTCTATGTTGTGGGAAACTCACTAGGAGGATTTGTTGCNTCGTATTTTGCAGCACTTAACCCTCATTTAGTGAAAGGTGTCACATTGCTCAATGCAACACCTTTTTGGGGATTTCTTCCTAACCCTATTAAGAGTCCAGGCTTGGCAAAAATATTTCCATGGGCAGGAACATTTCCCCTACCTGCTAATGTAAGGAAGCTTACAGAGTTGGTGTGGGAGAAGATTAGTGACCCTACAAGTATTGCTGAGGTGCTTAATCAGGTTTATGTAGATCGTTCAACGAATGTAGATAAAGTGTTTTCGCACATAATTGAAACCACAAGGCATCCTGCTGCTGCAGCATCATTTGCTTCAATTATGCAGGTGCCCGAAGCTCCATATTATCAAATCAGCCCNGCTGGTCACTGCCCTCATGATGAAGTCCCTGAGGTTGTAAATTTCTTACTACGCGGGTGGATCAGAAACCTTGAGTCTCAGGGTTCTATCTCATTGCCACTGCTTGATGACCTAGACAATATGAAACACACTAATAATGCCAGTGAGTTAGAATTTATCAGAGAAGGTGCAAGAAAATCAGTAAGGGTAACATTCTTTGGCTCCAGATTCTCACTTTGGGACAGGATAAGATCTCAAATCAACCCTCTCTCCAAGTTCAGGAAATTGGAAGCCAAACCTCAATGACATGATCAAAGTCTTCAAATATGTACACAATGTATATATAGACTGTTCTCTCTGATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00538	138503	141882	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000538s00027563.1	PF12697.2	Abhydrolase_6	137	370	6.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.470
SRR1783600	control	0.481
SRR1783602	moderate drought stress	1.081
SRR1811619	moderate drought stress	0.940

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.434
DRR006520	Root Summer glycyrrhizin high producing strain	2.532
DRR006521	Root Winter glycyrrhizin high producing strain	1.443
DRR006522	Root Winter glycyrrhizin high producing strain	1.514
DRR006523	Root Summer glycyrrhizin low producing strain	0.975
DRR006524	Root Summer glycyrrhizin low producing strain	1.102
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.588
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.531

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.902
SRR2868004	Drought Stress (root)	4.662
SRR2967015	Control (root)	5.804

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.550
SRR9715740	Leaf	33.414
SRR9715741	Leaf	28.669
SRR9715739	Root	0.507
SRR9715742	Root	2.891
SRR9715743	Root	3.064

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.976
SRR8749028	MeJA induced 9h	3.097
SRR8749029	MeJA induced 9h	3.784
SRR8749030	Uninduced	2.447
SRR8749031	Uninduced	4.529
SRR8749032	Uninduced	3.552

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.474
SRR8400027	Control - Root	4.399