Gene detail

Gene detail information of Glyur000538s00027561

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	0	NB-ARC domain-containing disease resistance protein
NR	XP_004513269.1	0	PREDICTED: putative disease resistance RPP13-like protein 1-like isoform X1 [Cicer arietinum]
COG	YP_007146276.1	7.00E-12	Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|A0A072TVQ8\|A0A072TVQ8_MEDTR	0	NBS-LRR type disease resistance protein {ECO:0000313\|EMBL:KEH17610.1}

Sequence

Transcript Sequence

>Glyur000538s00027561.1
ATGGTCGATGTGCTAGGTTCATTTGTCTCTGCCTTCTTGCAAGTGCTGTTGGATAGGATAGCCTGTGGTGAGCTCATAGACTTCTTCCGGGGCAACCATCTTGATGAGGCACTTCTAGACAAGTTGAAGATGCTCTTGCTATCCGTCACTACAGTCCTTAGTGATGCCGAGGAGAGACAGTTTATCGATCCGTTGGTGAAGGAGTGGGTTGATAGGCTTAAGAATGCTGCATACGATGCTGATGATATCTTGGATGAGATTGCCACCAAAGCCATGCAAGAAGAGAAGATGGAGACCTTAGATCAGGTAAGAGACTATGCTTCTTCTCTAAATCCATTTGCTGAGCGAGTTAAATCAAAAGTCGGAAGGATAGTTGAGAGGTTGAAATCTATAATAGAGCATAAAGATCTTCTTGGTCTTAAGGAAGGTGGTGTTGTAGGGAAATCACTTTGGTTAGCTTCAGGTTCAGCCACATCTTCTTTGGTGGATGAACACCAAGTGTATGGTAGAAATGGTGATAGGGAGAAGATCGTTGATTTTCTGTTATCAGGCAATAATTCCAATGGAGATGGGGTGCCTGTGGTTGCAATTGTTGGGATGGGAGGGGTAGGTAAGACGACTCTTGCTCAGATTTTGTACAATGATGAAAGGGCGAGGAATCATTTCCAATCAAGATCATGGACCTATGTTCCAGAGACTTTGAATGTGTATGAAATAACCAAAAAGGTATTTGAGTCATTCACTTTGTGGTATTCTAATATCTCAGACTTGAATGTACTCCAAATCAAGCTCAAGAAGAAACTATTAGGACAAAGGTTTCTACTTGTTTTGGATGGGTTTTGGAATGAAAACTTCCTTGATTGGGACATCCTCCTAAGACCATTTTTATCAGGGAATTGTGGAAGTAGAATCATTGTCACCACACGCAGTCAAAGCGTTGCGGTAGCGATCCGTGCTGATTTAACTCATTGCCTCTCGCTTCTATCTCATGAAGATACCTGGAAGTTGTTCTCAAGTCATGCATTCAAATCAGGAAAACCAGATGAGCATCCGGTCCTGGCGCAAATCGGCCGGAAAANAGTAAAGAAGTGCAATGGTCTTCCCCTAGCTGCAAAAGCGTTAGGGAGTCTCCTACATTCAAAAGAAGATGCTGGGGAGTGGGAATGTATATGTAATAGTAGGATATGGGAGTTACCAAATAATAAGAGTAGCATCCTTCCTGCTTTAAGATTGAGCTACACTCATCTACCTTCTCATCTAAAGCGTTGTTTTACTTATTGTTCCATATTTCCTAAAGGCTTTGAAATAAAAAAGTGGAACTTGATCTATTTATGGATGGCCGAAGGTGTCCTGCCACAGCCAAAAATGGAGAGGAGAATGGAAGAGGTAGGAGAAGAATGCTTTCAAGAGTTACTGTCTAGGTCATTCTTTCATCAGTCAACTCACCACATATCATGTTACATGATGCATGACCTTATCAATGACCTAGCACAGTGTGTTGCAGGTGAATTCTGTTACAAGCTAGATGATAATAGTCCAAGCAAAATCACGACGAGTGTTCGTCATGTATCGTATTTACAAGGCATATATGATGACCCTGAAAAGTTTGAGATCTTCTCTGAATGCCAGCAACTTAGGACCTTCCTCCCGTTCAGATTCTCACACTTTGGTCACACCTCTTCAATTACTAGTATGGTTTCGATTCTGTTACCGAAGCTGAAACGCCTGCGCGTGCTCTCTCTGTCTCACTATCCAATAACCAAGTTGCCAGATTCAGTTGGAAACCTATTGCATCTGCGGTATTTAGATCTTGCTTACACTGGAATNGAGCGTTTGCCTGATTCTGTCAGCACTTTGTATAACTTGGAGACACTATTGTTGTCAGGCTGCCGTCGTCTCACCATGTTACCAACAAACATGTCCAACCTTGTCAAGTTGCGCCGGCTTGATATTAGTGGAAGTAGCGTGATTGAGATGCCTGCAAAATTTGGCAAATTGAAGTCTCTTCAAGCGTTGACTTGTTTTGTTGTTGGCAGTGATGGGGGATCAAGAATAAGTGAGTTGGGGGAACTTTTGGAACTTCACGGAGCACTTTCAATTGTGAACCTACAGAATGTAGTTGATGCAAGAGAAGCCTTCAATGCCAGGTTGAGGAGTAAGAAATATCTTCATGTGCTAGAATTCAAGTGGACAACTATGACTCATTATGAACAGAGTGAAACTGAAGTACTCAAAATGCTAGAGCCACATCAAAATGTGAAGAGACTTAAAATTCAAAATTTTGGTGGTGATAAATTGCCAAATTGGTTGGGGAGTTTTTCTTTCTCTAGTATGGTGTTTCTACATCTTGCTGACTGCAGAAGTTGCTTGTCATTGCCATCACTTGGACAATTGCCCTCCCTCAGAGAATTCTGTATAACAACAATGACAAGCNTAGAGAAGGTGGGTCCAGAATTCTATGGGAATGTACTTGAACCATTCAGATCCTTGAAAATCATGAAGTTTGAGGACATGCCCAATTGGGAAGAATGGTCAACCAACAACCTTGAAGAAAGTGGGGTTTTCCCTTCACTCCAAGAGCTTTACCTAGAGAGATGTCCTAAACTGACCACAAAGTTACCTGACCAACTTCCTTCCTTGGATAAATTAGTGATCACAGCATGTCAAGCACTCACAAATCCAATGCCATGTCTTCCAAAACTGAGAGAGTTAGAGCTGACTGGTTGTGATGCATTGGTGTCATTATCTGAGCAAATGATGCAGGGAAATAAATGTCTTCAAGTCATGTCCATAAGCAATTGCCCCTCTCTGGTCACCATTCCTAGGGATGGCTTGCCAAGTACACTAAGGTCTCTTGAAATCTATGAGTGTAGGAATTTACAACTATTTCATCCTCAGAATCTGATGCAGGAGTGTCACTACTATCCTTCCCTTGAAAGACTACACTTGAAATGTTGTTGTGATTCTCTCATCACCTTTCCATTATCCCTCTTCCCCAAGCTTGAAGATCTTAGAGTACAAGACTGTAGCAATCTCCAGTTCTTTTCATCTGCTCCAAACAGTGTCCCACATCTTCGAAAATTGAAACTGAAGGAATGCTCCAAACTGNCTTGGTTTCCTGAAGGAGGGTTGCATGCTCCAAAGCTTGAGTCACTTTCTATCTGCAAATGTGTTGATCTCTCACCTGAGACTACATGGGGTCTTCCGGCAATGACATCACTAGCTTCCCTTTGTATCAGTGGACTACCCAGTCTCACTTCATTGGAGCACACAGGAATTCAGTACCTAACCTCTCTCAAAACTCTGAAGATTAAAGCTTGTGATAACCTTGGATCTCTACCTTTGAATGGACTAGTCACCTCCCTTTCTCATCTTACCATCAGAGCATGCCCATTGTTAAAAGTGCTGTGTGAAAGGGATACTGGGGAATACTGGAGTATGGTCTCTCTCATACCCTCCAGAGTCATTGAAGAGTAG

Protein Sequence

>Glyur000538s00027561.1
MVDVLGSFVSAFLQVLLDRIACGELIDFFRGNHLDEALLDKLKMLLLSVTTVLSDAEERQFIDPLVKEWVDRLKNAAYDADDILDEIATKAMQEEKMETLDQVRDYASSLNPFAERVKSKVGRIVERLKSIIEHKDLLGLKEGGVVGKSLWLASGSATSSLVDEHQVYGRNGDREKIVDFLLSGNNSNGDGVPVVAIVGMGGVGKTTLAQILYNDERARNHFQSRSWTYVPETLNVYEITKKVFESFTLWYSNISDLNVLQIKLKKKLLGQRFLLVLDGFWNENFLDWDILLRPFLSGNCGSRIIVTTRSQSVAVAIRADLTHCLSLLSHEDTWKLFSSHAFKSGKPDEHPVLAQIGRKXVKKCNGLPLAAKALGSLLHSKEDAGEWECICNSRIWELPNNKSSILPALRLSYTHLPSHLKRCFTYCSIFPKGFEIKKWNLIYLWMAEGVLPQPKMERRMEEVGEECFQELLSRSFFHQSTHHISCYMMHDLINDLAQCVAGEFCYKLDDNSPSKITTSVRHVSYLQGIYDDPEKFEIFSECQQLRTFLPFRFSHFGHTSSITSMVSILLPKLKRLRVLSLSHYPITKLPDSVGNLLHLRYLDLAYTGXERLPDSVSTLYNLETLLLSGCRRLTMLPTNMSNLVKLRRLDISGSSVIEMPAKFGKLKSLQALTCFVVGSDGGSRISELGELLELHGALSIVNLQNVVDAREAFNARLRSKKYLHVLEFKWTTMTHYEQSETEVLKMLEPHQNVKRLKIQNFGGDKLPNWLGSFSFSSMVFLHLADCRSCLSLPSLGQLPSLREFCITTMTSXEKVGPEFYGNVLEPFRSLKIMKFEDMPNWEEWSTNNLEESGVFPSLQELYLERCPKLTTKLPDQLPSLDKLVITACQALTNPMPCLPKLRELELTGCDALVSLSEQMMQGNKCLQVMSISNCPSLVTIPRDGLPSTLRSLEIYECRNLQLFHPQNLMQECHYYPSLERLHLKCCCDSLITFPLSLFPKLEDLRVQDCSNLQFFSSAPNSVPHLRKLKLKECSKLXWFPEGGLHAPKLESLSICKCVDLSPETTWGLPAMTSLASLCISGLPSLTSLEHTGIQYLTSLKTLKIKACDNLGSLPLNGLVTSLSHLTIRACPLLKVLCERDTGEYWSMVSLIPSRVIEE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00538	125366	128842	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000538s00027561.1	PF00931.17	NB-ARC	175	452	5.00E-72
Glyur000538s00027561.1	PF00560.28	LRR_1	621	643	0.81
Glyur000538s00027561.1	PF00560.28	LRR_1	857	880	1.2

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.002
SRR1783600	control	1.005
SRR1783602	moderate drought stress	1.584
SRR1811619	moderate drought stress	1.580

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.858
DRR006520	Root Summer glycyrrhizin high producing strain	0.887
DRR006521	Root Winter glycyrrhizin high producing strain	0.624
DRR006522	Root Winter glycyrrhizin high producing strain	0.553
DRR006523	Root Summer glycyrrhizin low producing strain	5.272
DRR006524	Root Summer glycyrrhizin low producing strain	5.339
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.505
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.696
SRR2868004	Drought Stress (root)	3.687
SRR2967015	Control (root)	2.281

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.564
SRR9715740	Leaf	7.896
SRR9715741	Leaf	14.838
SRR9715739	Root	0.715
SRR9715742	Root	4.865
SRR9715743	Root	3.177

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.831
SRR8749028	MeJA induced 9h	11.290
SRR8749029	MeJA induced 9h	5.833
SRR8749030	Uninduced	12.885
SRR8749031	Uninduced	11.999
SRR8749032	Uninduced	6.548

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.698
SRR8400027	Control - Root	2.346