Gene detail

Gene detail information of Glyur000538s00027553

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51950.2	5.00E-124	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
NR	XP_006591992.1	0	PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Glycine max]
Swissprot	tr\|Q0D3J9\|C3H53_ORYSJ	9.00E-180	Zinc finger CCCH domain-containing protein 53
trEMBL	tr\|K7LFG9\|K7LFG9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G35990.4}

Sequence

Transcript Sequence

>Glyur000538s00027553.1
TTGGGGCCAAAATTGACAGCTTTACTATTTTGATATTTCAACACAAGCAAGGATNTGGATCCATCTCGAACAAACACCACAACACAAATGGGACACACGCACGCTCTCTCTCTCTCTCTCGCGCGCTTGTTAATGTTACCATGATTTTTGCAAGGACAAAGAAGGGGAAGGGAAGGGGTCTACACAATAATAACGTAACATAAGAGGAAGTGGGCATACTATGTTATTAAACTATTACTATTATTATAATTATTATTATTATAAGTGAGTGAGTGGGAGATAGATAGATAGAAAGAGAGAGAAGAAAATCTTGGCTTGGCTTGGCCTGGCCTGGCCTAGTCTTCAGNGTTGTGTGAGAGAGAGAGATAAATAAAGGGGGCAAGGCTTAGAAAGAGTTGAAGCTCTCAACTTCACTGCCCGGAACCCCATAAAAACACNACACCACACATAGCAGGGGGCAGTGAGGCAATTGATGGTTCTTCTTCTGCTTCTGCTGCTCCTGCTACTTGCACCTGCCACCTTATTGTAAAGAGAAGGCGGTGGTTTGGCTTTTGTAGTAAAGTTGACACTGCCATTGTGTGTGAAGGAAAAAAAAAACTGTCTTCNAAGAAAGTAACAAAAAACAGAGTGAAGAAGAGAGTTTATCCATATATCCTTTCATGGGAGGAATATGAGAAAGAAACACCACTCATCTCAAGTTGTTGGTAGGTAGGGCTTATGTGTGGTTGAGAAAGAAACTTTACTTGTAACAGGAGTGAGAGAAAGATAGCCAGTGGAAAATAGAGAGAGAGAGACACACACACAACAAAAAATTGAATTTTTAGGGGATTAGGCTAGTTTTTTTTTGTTGTTGTGGGAACCAATCCTTTTTTTCACACACTCATGGATGGTTATGAAGCTACAAGGATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAACGCTTCCAAAATCATGGGTGTGCTTCTGATTCAAGACCATGGTGAGAAGGAAATGATAAGGTTAGCATTTGGCCCTGAAGCACTTGTTCACTCTGTGATTGTCAAAGCACGCAAGGAGTTGGGTTTACCTTCGAATTCTCCGCCAACACCTTCAACTCCTCCATCACCTTCTCCTTTCCTTTCAAGGCAAAACTCTTCCACTACTTCCTCTTCAAGGTTAAGTGGTATCAATATTCCTCCTTCTCTCACTATTCCAAACCCTTCTAGTTCTTGGGGTACTNTGTGTGAGCTTCAAAACCATGATGATCACTTGATGAGCCCCAACAATTTGGTTGTGGGGTCTAATTCTACTTCTTCATCTTCTTTGCCTTTCTATGCANATAATGGCGGAGGAGGGTCAGATCCAATTGATGATTTTCAGCTTCAAGACCAGCTTTCTTTCTTGAATGATGGTTCTTCTCCNACTACTACTCTTTTAGGCCACAAGGGTAGTTGTTCTTCTGATTTGTTTTACCCTNCTCAGTCAGAAACTGACCCTAGTACTCTTTTTCCTTCATATGGTTGGGGTGGTGGAGGAGGGTCTCTTCATAGGAGGAGTTGTTCTGTGAATGATGCTTGTTTGGGTTCTGAGGACCCTAATTCTGGGTTGGGGTGGAAACCTTGCCTTTACTTTGCTAGAGGGTACTGTAAAAATGGAACTAGCTGCAGGTTCCTTCATGGAGGAGTTGATGCTGATGGTGCTGCTGCAAATATTGTTGGGTCTCCAAGTAAGATTGAGATGATGGATCAGTGCCATGAGACTTTACTTAGATCTAAATCTGCTCAACAACAACAACAAAGACTTGCTGCTGCTTCTCACCTCATGGCTTCTAACTCTTTTCCATACTCACCAAAGTGCATGAATTTCCTCTTACAGCAGCAGCANCAAAATGATACTCAGAGAGCGGCAGCTGCAGCTCTTATGATGAGTGAGGACTTGCACAAATTTGGAAGATCAAGGCTTGANAGGAATGATTTTTCTTTGAATAGTCCTGGAATGGTTAACCCAGCTTCTAGGCAGATCTACTTGACCTTCCCAGCTGATAGCACTTTCAGAGAGGAAGATGTTTCCAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTGAGGATCCCATACCAGCAGAAGCGTATGTTTGGCTTTGTTACATTTGTTTATCCAGAGACTGTGAAGCTCATTCTGTCTAAAGGGAACCCTCATTTCGTTTGTGATGCTAGAGTGCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCCAGACAAGAAGCAGCAGCAACAGGTAGAAAGGGGTGATTTTTCACCTTGTGGTACTCCAACTGGACTAGATGCTAGAGACCAATATGATCTTCAACTTGGAGGCAGAATGTTCTACAATACACAAGACATGCTGTGGAGGAGGAAACTGGAGGAGCAAGCTGATTTTCAGCAAGCTCTTGAGCTTCAAAGTAGGAGGTTAATGGGTCTTCAACTTCTTGACATCAAGAAGCAACACCAACGTGCACTTTCCACTGGAAGTCCAATCCCTTCTCCCACTCACTCTCCTAACGTGTTCAATCAGAATCTTGTTCTTCCTTCCTTTCACAGAAACTCAGAGGCCCCAGAGGAGAGTGGCTCAATTTCTGCTCCAGCTAGTACTGTATCAGTTTCTGCTGGTCAACAACAACAGGTCAACGTTTCAGTTATGAAGGAAGTGGTGGTCAANGGTGAGAATGGATATAGTGAAGGCAATAACAAGAAGCAGAGGTCTAGTCATGAAGAGCGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCTACAAAAGCTGCTTCTGGGGACTTGGTGGCTCCCTTCTCCAATGGACCTAATGAGGTCATTGATTCAGATCCCTCAGCTGCATCTGTTAACTCTAAATTTGGCACTAGCACATTACTTCCATCAGCAGCAGCATCTGCTCTTGACATGGGGTCTTTCAAATCCTATAACTGCCAAATACCCAGGTTCTCTTCTGGCCATGGAACTATTGGGATGTTTGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGAGCTACATACAGGAAAGTGAAGATCACCAAACAAATTACAAATCTGTAGAGAATCACCACCACCACCACCATCATCATCACCGTCACCATCAATGATCAAATACTATACTACTTACTACCATACAAAATGCATACGTAAAAAAGCAGTTTCAGTAAAAAGGAAAGTGGGGCACAGGCATTCCCTTTCTTTCTTTTGTTAGCATTATTGTTGTTGTACCATTTTCTCTTTCTCTCCTCATATCTGTAGTAGCTGAACCACAGGTTAAAAAAATAACACAGAATTTCAGAGTCAATGTGTAGTAGGAATTCCCTGGCACTGTAATTTCTCCTCCTTCCCTCCTTTCTTTACACACCCTTTGGTGGTAGTTGGATGATGTAGTAGAGTGTAGATTGTTAGAGTCCTATGTTGTTGTTACATTACACAGGTATAATTTCAAAGTCTTTGTACAGCTGGAGGAAAAAAGCATGCACAGATGAAGTGGTAAAACCGTAATTGAAGAGATGTTATAACTACAAGACAAGGCTGATTGTGATTCAAATCCCACCCATGATGGGTAATTAGAGTTTGAGGGACTAGGAGGAAGGAGGGGAATGTATAATTGTTAATCATAGCTGGGTTAAAAGTTAAAAAGTGGAGATTTTTTACCTTTGATGTTAATGTTGCAGTTATAATGCTTTTGTACTTGTACTAAATTGTTAGACACAGTTATATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00538	57410	62763	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000538s00027553.1	PF00642.19	zf-CCCH	241	261	5.40E-05
Glyur000538s00027553.1	PF14259.1	RRM_6	383	435	1.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	83.311
SRR1783600	control	83.446
SRR1783602	moderate drought stress	104.779
SRR1811619	moderate drought stress	103.482

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	86.510
DRR006520	Root Summer glycyrrhizin high producing strain	85.257
DRR006521	Root Winter glycyrrhizin high producing strain	34.300
DRR006522	Root Winter glycyrrhizin high producing strain	33.543
DRR006523	Root Summer glycyrrhizin low producing strain	81.413
DRR006524	Root Summer glycyrrhizin low producing strain	80.762
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.193
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.898

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	119.588
SRR2868004	Drought Stress (root)	143.461
SRR2967015	Control (root)	156.881

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.066
SRR9715740	Leaf	50.976
SRR9715741	Leaf	48.933
SRR9715739	Root	32.358
SRR9715742	Root	105.469
SRR9715743	Root	89.730

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	57.289
SRR8749028	MeJA induced 9h	43.607
SRR8749029	MeJA induced 9h	38.702
SRR8749030	Uninduced	29.224
SRR8749031	Uninduced	15.313
SRR8749032	Uninduced	21.118

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	122.211
SRR8400027	Control - Root	126.798