Gene detail

Gene detail information of Glyur000538s00027552

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57330.1	0	autoinhibited Ca2+-ATPase 11
NR	XP_004513267.1	0	PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type-like [Cicer arietinum]
COG	YP_004971639.1	2.00E-126	plasma-membrane calcium-translocating P-type ATPase [Desulfosporosinus orientis DSM 765]
Swissprot	tr\|Q9M2L4\|ACA11_ARATH	0	Putative calcium-transporting ATPase 11, plasma membrane-type
trEMBL	tr\|G7JUR7\|G7JUR7_MEDTR	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}

Sequence

Transcript Sequence

>Glyur000538s00027552.1
ATGGAGAAGTACCTGAGAGAGAACTTCCAGGTGCAGCCGAAGCGCTCATCGGAGGCCGCCCTTCGCCGATGGAGATCCGCCGTCTCCGTCGTGAAGAATCCCCGCCGCCGCTTCCGCATGGTCGCCAATCTCGCCCAACGCGCCGAGGCCGAACGAAAGCGCAAGAAGATCCAGGAAAAGATACGGGTTGCTCTCTATGTCCAAAAAGCAGCGTTGCATTTTATAAACGCTGGGAGCCGTGGTGGAAGTGGTGCTTACATGCTCCCCAAAGAGATTCAAGAAGCAGGTTTCGGAATAGCACCTGATGAATTAGCATCCATTGTTCGATCCCATGACAGTAAAAGTTTAGAACATCATGAAGGAGTTGAAGGATTAGCTAGATCTGTCAGCGTGTCATTGGAAGAAGGTGTTAGTTCACATGACATCCAACACAGACAAAACATNTATGGTTATAACAGACACACAGAGAAGCCCTCTAGAAGCTTCTGGATGTTTGTTTGGGATGCAATGCAGGACTTGACTCTAATGATCCTCATGGCATGTTCTGTTGTTTCAGTAGGTGTTGGAATCTCAACTGAAGGCTGGCCAAAAGGTATGTATGATGGAGTGGGAATCATACTATGTATTGTTTTAGTGGTCTTTGTCACTTCAGTCAGTGACTATAAACAATCTTTGCAATTTAAGGTTCTGGATAAAGAAAAGAAAAATGTCAGCATTCAAGTCACAAGGGATGGTAGGAGGCAAAAGGTTTCAATCTATGATCTTGTTGTGGGAGATATAGTGCATCTCTCAATTGGGGACATAGTTCCTGCAGATGGGTTATTCATATCAGGTTTTAGCTTGTTGATTGATGAGTCAAGCCTATCAGGTGAGAGTGAGGCTGTGAATGTTGACCAACAGAAGCCTTTTCTTCTTTGTGGGACCACAGTGCAAGATGGGTCTGCTAAGATGCTTGTGACTTCAGTTGGTATGAGGACTGAATGGGGGAGATTGATGGATACTTTGAATGAAGGTGGAGATGATGAGACACCCCTTCAGGTGAAACTAAATGGGGTTGCTACCATTATTGGGAAGATTGGGTTGGGTTTTGCCCTGCTCACATTCTTGGTTCTTACTGGGAGGTTTCTGTTGGGGAAATTGGCTCACCATGAGATCACTCATTGGTCTTTAAATGATGCTTCTATGCTCCTCAATTTCTTTGCCACTGCTGTCATTATAATAGTTGTGGCAGTTCCTGAGGGGCTTCCTTTGGCAGTGACACTAAGCCTTGCATTTGCAATGAAGAAACTAATGAATGATAAGGCACTTGTCAGGCACCTTTCTGCATGTGAGACAATGGGTTCTGCTGGGTGTATTTGCACAGATAAAACTGGGACTTTGACTACAAATCACATGGTAGTGGACAAGATATGGATCTGTGAACAAACTAAGGGGTTCAAAAGCGGCAACAGTGATAACAATGTGTTTAAGAACTCAGTTTCTGAGAAGGTATTTGATCTCCTTTTGCAGTCCATATTCCAGAACACTGGCTCAGAGGTAGTCAAAGGGCAAGATGGGAAGAACAAGGTCATGGGTACTCCTACAGAGTCGGCATTGCTGGAATTTGGTTTGCTTTTGGGAGGTGATCGTGATTGTACGTTTTATAATGAGAAATATAAGGTAGTTAAGGTTGAACCTTTCAATTCAGTCAGAAAAAAGATGTCAGTGCTTGTGGCTCTTCCTGATGGCACCAACAAGTCTCGAGCATTTTGTAAAGGAGCATCAGAGATAGTTCTGGAAATGTGTGACAAANTTGTTAATGCAGATGGCAAAGTCGTCCATTTGAATGAAAAACAAAGAAATGGCATCACACAAGTTATCAATGGTTTTGCCTCAGGGGCACTGAGAACACTCTGCATGGCCTTCAGGGATCTTGAAGGATCCACTGAAAGTGGTGATGATAGTATTCCTGAGGATAAATACACGTTAATAGCTATTATTGGGATCAAGGATCCAGTGAGGCCAGGGGTAAAAGAAGCTGTTAAGACTTGTTTGGCAGCTGGGATTACTGTTAGAATGGTAACTGGTGACAATATAAACACTGCTAAAGCAATAGCTAGAGAATGTGGCATCTTGACTGATGGATTGGCCATAGAGGGACCAGATTTCCGGAACAAGACCCAGCAAGAAATGGAAGAGATAATACCAAAATTACAGCACACCTTAGTGACCCATTTGAGGAATGACTTTAATGAAGTTGTGGCAGTAACTGGTGATGGGACCAATGATGCTCCAGCGTTGCATGAGGCTGATATTGGACTTGCTATGGGTATTGCTGGGACAGAGGTTGCCAAAGAGAATGCGGATGTAATTGTACTGGATGATAACTTTACCACCATTGTGAATGTTACCAGATGGGGCCGTTCTGTATATGTTAATATACAGAAGTTTGTCCAGTTCCAGTTAACGAAACCACCCATTGGAAGGAACGCCAAATTCATCACNGGGATCATGTGGAGGAACATAATTGGTCAGAGCATCTATCAAACTATTGTCCTTTTGGTTCTCAAATTTGGTGGGAAACAGATTCTNAAGCTCAATGGACCTGATTCTACCTCTATTCTGAATACTGTCATATTTAACACCTTTGTGTTTTGCCAGGTANTCAACGAGATAAACAGCCGAGACATGGAGAAGATAAATGTATTCCAAGGCATGTTCAGCAGTTGGATATTCCTGATGGTGATGGCCTCAACGATATGCTTCCAAGTCATAATAGTTGAATATCTGGGTGCTTTTGCTCAGACAGTGCCACTGAGCTGGGAGTTGTGGTTAACCAGCGTCATGATTGGTGCGGTGAGTTTGCCCGTAGCTGTTGTCCTCAAGTGCATTCCGGTTCCCGTCGGGCCTCGTCGCTTGAAAGTTGTGTTGGGTAGTTACCCTCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00538	41168	49896	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0070588 calcium ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0005388 calcium-transporting ATPase activity

GO:0005516 calmodulin binding

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000538s00027552.1	PF12515.3	CaATP_NAI	4	50	5.60E-18
Glyur000538s00027552.1	PF00690.21	Cation_ATPase_N	117	185	2.70E-14
Glyur000538s00027552.1	PF00122.15	E1-E2_ATPase	204	445	3.80E-61
Glyur000538s00027552.1	PF00702.21	Hydrolase	451	764	7.10E-24
Glyur000538s00027552.1	PF00689.16	Cation_ATPase_C	815	956	5.00E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.547
SRR1783600	control	0.503
SRR1783602	moderate drought stress	0.258
SRR1811619	moderate drought stress	0.210

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.331
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.389

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.128
SRR2868004	Drought Stress (root)	1.148
SRR2967015	Control (root)	0.720

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.615
SRR9715740	Leaf	0.728
SRR9715741	Leaf	0.196
SRR9715739	Root	0.286
SRR9715742	Root	0.785
SRR9715743	Root	0.596

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.301
SRR8749028	MeJA induced 9h	10.667
SRR8749029	MeJA induced 9h	5.103
SRR8749030	Uninduced	6.875
SRR8749031	Uninduced	5.261
SRR8749032	Uninduced	2.619

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.273
SRR8400027	Control - Root	0.954