Gene detail

Gene detail information of Glyur000538s00027550

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63440.1	0	cytokinin oxidase/dehydrogenase 6
NR	XP_007131444.1	0	hypothetical protein PHAVU_011G014000g [Phaseolus vulgaris]
COG	YP_007093009.1	8.00E-83	FAD linked oxidase domain-containing protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q9LY71\|CKX6_ARATH	0	Cytokinin dehydrogenase 6 (Precursor)
trEMBL	tr\|V7AF09\|V7AF09_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW03438.1}

Sequence

Transcript Sequence

>Glyur000538s00027550.1
CTTCAACTTGCCTTCTGTATTGTATTATGATGGCTTTGGCTTTGGCTTTGGCTTTGGCTTTGCCTTCTCTTTTAAACAAGCTACCCCAAAAGAAAATCCTAAGACTCTTCCTGCTAAGTAGGCAGTCCTCATACGCATCTCTCATCATTAACTGAGGAATGGTTGACTTAGCCACCCACAAACTTCTATAAATTCTAGCCCAAACCTTAAGTTTCTCCACTGTCCATCACTTTCTCATTTTATTTTGTGCTCACAAGGAAACAAAGCCTATAAGATCAAGCACCTTATTATTCCTTCTTCAACTACCATCATACTACTACTATTACTACTACTACTACTACCTTCTAAAATGAGATCCCCACCATTTAGCCTTGTTAGAGAACACAACATTATGTTCCTCAGAGGCTTCACTATCTTGTTCCTTAGTTGCATAGCCATTAGGCTTAACTTCTGTCTTTCGAGTGCCCCTTCTTCACTTAAAGCACTTCTTCCCCTTGGAGGGCATTTCAGTTTTGATGAGGTTAGCCTTAGCCATGCAGCCAGAGACTTTGGCAACAGGTACCAATACCATCCAATAGCAGTGCTGCATCCTGAATCAGTTTCTGAGATTGCAGCCACCATAAGGCATATCTGGCACATGGGTCCAACCTCCCATCTCACTGTTGCAGCCAGAGGCCATGGCCACTCACTCCAGGGCCAGGCACAAGCTCATGGAGGAGTTGTGATCAACATGGAATCACTCAAGGTCCCAGAAATGCAGGTACATGTGGGGAATTCCCCATATGTGGATGTCTCAGGTGGAGAGTTGTGGATAAACATCTTGCATGAGACTCTAAGATATGGGTTGGCACCAAGATCATGGACAGATTACCTACATCTAACAGTTGGTGGTACTCTCTCCAACGCTGGTGTCAGTGGGCAAGCATTTAGGCATGGTCCACAGATAAGTAATGTTCAGCAGCTGGAGATTGTTACAGGAACAGGGGAGGTGGTAAACTGTTCTGAGGAGCAGAATGAGGAACTCTTTCACAGCGTTCTTGGGGGGCTTGGCCAGTTTGGCATTATAACCCGGGCGAGAATTCTCCTGGAACCAGCACCTGCCATGGTAAAATGGATTAGAGTGCTATACTCAGATTTCACAGCATTTACTAGAGACCAAGAGAAATTAATATCTGAAGGAAACGCATTCGATTACATTGAAGGGTTTGTGATAATAAACAGAACAGGTCTGCTAAATAACTGGAGATCATCCTTCAACCCACAAGACCCAGTTCAAGCCAGTCATTTCAAGTCGGATGGAAGAACCCTCTTCTGCCTAGAATTGGCCAAATATTTCAACTTGGAAGAAATCGATGTCGTAAATCAGGAAGTTGAGAAACATTTGTCCCATTTAAGCTATATCCCATCAACCCTTTTCCTAACAGAAGTCACATATGTGGACTTCTTAGACAGGGTGCATGTATCTGAGGTCAAATTGCGCTCAAAAGGCTTATGGGAGGTTCCACACCCATGGCTCAATCTATTTATACCCAAAAGCAAAATACACAACTTTGCAGAAGTGGTATTTGGGAATATCCTAACAGAAACAAGCAATGGCCCCGTACTTATCTACCCAGTAAACAAATCAAGGTGGGACAATAGAACTTCTGTTGTTATTCCAGAGGAAGATATTTTCTACTTAGTGGCATTTCTTACCTCTGCAGTTCCTTCTTCCAATGGAATCGATGGCCTAGAACACATACTAAGTCAGAACAAAAGAATTTTGGAATACTGTGAAAGAGAACATCTTGGAGTAAAGCAATACTTGCCCCACTACAATACACAGGAAGAGTGGAGGGCCCATTTTGGTCCTCAGTGGGAGGCTTTTCGGCAAAGAAAATCTGTTTATGACCCATTGGCAATACTTGCTCCAGGCCAACGAATATTTCACAAAACAATAGCCTTCTCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00538	24742	27310	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00279	CKX	EC:1.5.99.12	Zeatin biosynthesis	map00908

Gene Ontology

biological_process

GO:0009690 cytokinin metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0019139 cytokinin dehydrogenase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000538s00027550.1	PF01565.18	FAD_binding_4	75	218	4.30E-22
Glyur000538s00027550.1	PF09265.5	Cytokin-bind	250	526	3.50E-115

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.151
SRR1783600	control	2.086
SRR1783602	moderate drought stress	1.503
SRR1811619	moderate drought stress	1.413

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.700
DRR006520	Root Summer glycyrrhizin high producing strain	9.913
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	7.985
DRR006524	Root Summer glycyrrhizin low producing strain	7.943
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.312
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.201

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.838
SRR2868004	Drought Stress (root)	4.545
SRR2967015	Control (root)	6.030

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.801
SRR9715740	Leaf	3.568
SRR9715741	Leaf	3.477
SRR9715739	Root	0.798
SRR9715742	Root	7.924
SRR9715743	Root	5.657

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	276.603
SRR8749028	MeJA induced 9h	80.948
SRR8749029	MeJA induced 9h	99.911
SRR8749030	Uninduced	69.664
SRR8749031	Uninduced	15.892
SRR8749032	Uninduced	35.345

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.003
SRR8400027	Control - Root	5.245