Gene detail information of Glyur000538s00027548 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13460.1 | 8.00E-54 | IQ-domain 11 |
| NR | XP_003539928.1 | 0 | PREDICTED: protein IQ-DOMAIN 14-like [Glycine max] |
| trEMBL | tr|I1LP01|I1LP01_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G01410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00538 | 7937 | 10829 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000538s00027548.1 | PF13178.1 | DUF4005 | 289 | 369 | 2.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.023 |
| SRR1783600 | control | 14.888 |
| SRR1783602 | moderate drought stress | 20.808 |
| SRR1811619 | moderate drought stress | 20.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.787 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.552 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.234 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.020 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.032 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.926 |
| SRR2868004 | Drought Stress (root) | 4.537 |
| SRR2967015 | Control (root) | 4.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.094 |
| SRR9715740 | Leaf | 0.696 |
| SRR9715741 | Leaf | 0.525 |
| SRR9715739 | Root | 0.273 |
| SRR9715742 | Root | 1.829 |
| SRR9715743 | Root | 1.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.057 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.004 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.404 |
| SRR8400027 | Control - Root | 18.094 |